RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 SCARF1Q14162 830 aa21.54■■□□□ 1.04
HLA-DQB1-201ENST00000374943 FAM182BQ5T319 152 aa21.54■■□□□ 1.04
HLA-DQB1-201ENST00000374943 NOL8Q76FK4 1167 aaKnown RBP21.54■■□□□ 1.04
HLA-DQB1-201ENST00000374943 MPHOSPH8Q99549 860 aa21.54■■□□□ 1.04
HLA-DQB1-201ENST00000374943 TAF1P21675 1872 aa21.54■■□□□ 1.04
HLA-DQB1-201ENST00000374943 COL4A1P02462 1669 aa21.54■■□□□ 1.04
HLA-DQB1-201ENST00000374943 MAST3O60307 1309 aa21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 IGHMBP2P38935 993 aaKnown RBP21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 SF3B3Q15393 1217 aaKnown RBP21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 ZSCAN31Q96LW9 406 aaPredicted RBP21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 SEC31BQ9NQW1 1179 aa21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 GNPATO15228 680 aa21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 UQCRFS1P1P0C7P4 283 aa21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 MCAMP43121 646 aa21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 ZAP70P43403 619 aa21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 SLC10A5Q5PT55 438 aa21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 SH2B1Q9NRF2 756 aaPredicted RBP21.53■■□□□ 1.04
HLA-DQB1-201ENST00000374943 SLC5A1P13866 664 aa21.52■■□□□ 1.04
HLA-DQB1-201ENST00000374943 CPA1P15085 419 aa21.52■■□□□ 1.04
HLA-DQB1-201ENST00000374943 BCL11BQ9C0K0 894 aaPredicted RBP21.52■■□□□ 1.04
HLA-DQB1-201ENST00000374943 NYXQ9GZU5 481 aa21.52■■□□□ 1.04
HLA-DQB1-201ENST00000374943 RTCBQ9Y3I0 505 aaKnown RBP21.52■■□□□ 1.04
HLA-DQB1-201ENST00000374943 BAG4O95429 457 aaKnown RBP21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 RPS6KB1P23443 525 aa21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 PKP1Q13835 747 aa21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 TTF1Q15361 905 aaPredicted RBP21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ERFEQ4G0M1 354 aa21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 TBC1D9BQ66K14 1250 aa21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 CCDC102BQ68D86 513 aa21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 BLOC1S2Q6QNY1 142 aa21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 CDC5LQ99459 802 aaKnown RBP21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ZDHHC9Q9Y397 364 aa21.51■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ANKRD1Q15327 319 aa21.5■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ZPR1O75312 459 aa21.5■■□□□ 1.03
HLA-DQB1-201ENST00000374943 APPBP2Q92624 585 aa21.5■■□□□ 1.03
HLA-DQB1-201ENST00000374943 TAF6LQ9Y6J9 622 aa21.5■■□□□ 1.03
HLA-DQB1-201ENST00000374943 M0R2C6 588 aa21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 BRD1O95696 1058 aa21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 CYP21A2P08686 494 aa21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 PHKA1P46020 1223 aa21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ZSCAN25Q6NSZ9 544 aa21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 OSBP2Q969R2 916 aa21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.49■■□□□ 1.03
HLA-DQB1-201ENST00000374943 GOLGA6L22H0YM25 854 aa21.48■■□□□ 1.03
HLA-DQB1-201ENST00000374943 TRAK2O60296 914 aa21.48■■□□□ 1.03
HLA-DQB1-201ENST00000374943 HSPD1P10809 573 aaKnown RBP21.48■■□□□ 1.03
HLA-DQB1-201ENST00000374943 SLFNL1Q499Z3 407 aa21.48■■□□□ 1.03
HLA-DQB1-201ENST00000374943 SRP68Q9UHB9 627 aaKnown RBP21.48■■□□□ 1.03
HLA-DQB1-201ENST00000374943 PI16Q6UXB8 463 aa21.47■■□□□ 1.03
HLA-DQB1-201ENST00000374943 HELBQ8NG08 1087 aaPredicted RBP21.47■■□□□ 1.03
HLA-DQB1-201ENST00000374943 SETDB2Q96T68 719 aa21.47■■□□□ 1.03
HLA-DQB1-201ENST00000374943 SKOR2Q2VWA4 1001 aaPredicted RBP21.47■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ARHGEF1Q92888 912 aaKnown RBP21.47■■□□□ 1.03
HLA-DQB1-201ENST00000374943 NEK1Q96PY6 1258 aa21.47■■□□□ 1.03
HLA-DQB1-201ENST00000374943 MYH13Q9UKX3 1938 aa21.46■■□□□ 1.03
HLA-DQB1-201ENST00000374943 TNRC6CQ9HCJ0 1690 aaKnown RBP21.46■■□□□ 1.03
HLA-DQB1-201ENST00000374943 LARGE1O95461 756 aa21.46■■□□□ 1.03
HLA-DQB1-201ENST00000374943 ADD2P35612 726 aa21.46■■□□□ 1.03
HLA-DQB1-201ENST00000374943 C3orf67Q6ZVT6 689 aa21.46■■□□□ 1.03
HLA-DQB1-201ENST00000374943 HMGB1P09429 215 aaKnown RBP21.45■■□□□ 1.02
HLA-DQB1-201ENST00000374943 ADRA2BP18089 450 aa21.45■■□□□ 1.02
HLA-DQB1-201ENST00000374943 CHRNDQ07001 517 aa21.45■■□□□ 1.02
HLA-DQB1-201ENST00000374943 SMIM5Q71RC9 77 aa21.45■■□□□ 1.02
HLA-DQB1-201ENST00000374943 AMIGO3Q86WK7 504 aa21.45■■□□□ 1.02
HLA-DQB1-201ENST00000374943 ANKRD18AQ8IVF6 992 aa21.45■■□□□ 1.02
HLA-DQB1-201ENST00000374943 UBE3CQ15386 1083 aa21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 BICDL1Q6ZP65 573 aa21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 FAM196AQ6ZSG2 479 aa21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 BSDC1Q9NW68 430 aaPredicted RBP21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 COL9A3Q14050 684 aaPredicted RBP21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 TOB2Q14106 344 aaPredicted RBP21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 ME3Q16798 604 aa21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 WASHC4Q2M389 1173 aa21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 PIH1D3Q9NQM4 214 aaKnown RBP21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 TPCN1Q9ULQ1 816 aa21.44■■□□□ 1.02
HLA-DQB1-201ENST00000374943 CHD4Q14839 1912 aa21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 WDR33Q9C0J8 1336 aaKnown RBP21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 GTF2E1P29083 439 aaPredicted RBP21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 TRAPPC3LQ5T215 181 aa21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 NBPF5PQ86XG9 351 aaPredicted RBP21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 SPATA5Q8NB90 893 aa21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 CTNNA3Q9UI47 895 aa21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 TCHHQ07283 1943 aa21.43■■□□□ 1.02
HLA-DQB1-201ENST00000374943 FOXP2O15409 715 aa21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 ST3GAL1Q11201 340 aa21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 SLC27A3Q5K4L6 730 aa21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 TPTE2Q6XPS3 522 aa21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 STOX1Q6ZVD7 989 aa21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 LARP6Q9BRS8 491 aaKnown RBP21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 SMC3Q9UQE7 1217 aa21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 CARMIL3Q8ND23 1372 aa21.42■■□□□ 1.02
HLA-DQB1-201ENST00000374943 RFC4P35249 363 aa21.41■■□□□ 1.02
HLA-DQB1-201ENST00000374943 RASGRF1Q13972 1273 aa21.41■■□□□ 1.02
HLA-DQB1-201ENST00000374943 CCDC83Q8IWF9 413 aa21.41■■□□□ 1.02
HLA-DQB1-201ENST00000374943 NLRP3Q96P20 1036 aa21.41■■□□□ 1.02
HLA-DQB1-201ENST00000374943 PUS7LQ9H0K6 701 aaKnown RBP21.41■■□□□ 1.02
HLA-DQB1-201ENST00000374943 LRRC4BQ9NT99 713 aa21.41■■□□□ 1.02
HLA-DQB1-201ENST00000374943 UBE4AQ14139 1066 aa21.4■■□□□ 1.02
HLA-DQB1-201ENST00000374943 KRT27Q7Z3Y8 459 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms