RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 PALD1Q9ULE6 856 aa18.73■□□□□ 0.59
CCDC40-202ENST00000374876 TTC41PQ6P2S7 1318 aa18.73■□□□□ 0.59
CCDC40-202ENST00000374876 PPEF1O14829 653 aaPredicted RBP18.73■□□□□ 0.59
CCDC40-202ENST00000374876 MYH3P11055 1940 aa18.72■□□□□ 0.59
CCDC40-202ENST00000374876 BBOX1O75936 387 aa18.72■□□□□ 0.59
CCDC40-202ENST00000374876 RPS8P62241 208 aaKnown RBP18.72■□□□□ 0.59
CCDC40-202ENST00000374876 ZGPATQ8N5A5 531 aaKnown RBP18.72■□□□□ 0.59
CCDC40-202ENST00000374876 RTN4Q9NQC3 1192 aaKnown RBP18.72■□□□□ 0.59
CCDC40-202ENST00000374876 GLRX3O76003 335 aaKnown RBP18.71■□□□□ 0.59
CCDC40-202ENST00000374876 CYP2E1P05181 493 aaPredicted RBP18.71■□□□□ 0.59
CCDC40-202ENST00000374876 ITGA6P23229 1130 aa18.71■□□□□ 0.59
CCDC40-202ENST00000374876 ARFGEF1Q9Y6D6 1849 aa18.71■□□□□ 0.59
CCDC40-202ENST00000374876 GPATCH3Q96I76 525 aa18.71■□□□□ 0.59
CCDC40-202ENST00000374876 TMX3Q96JJ7 454 aa18.71■□□□□ 0.59
CCDC40-202ENST00000374876 PA2G4Q9UQ80 394 aaKnown RBP18.7■□□□□ 0.58
CCDC40-202ENST00000374876 SGSM2O43147 1006 aa18.69■□□□□ 0.58
CCDC40-202ENST00000374876 IFIT2P09913 472 aaKnown RBP18.69■□□□□ 0.58
CCDC40-202ENST00000374876 XRCC6P12956 609 aaKnown RBP eCLIP18.69■□□□□ 0.58
CCDC40-202ENST00000374876 IL17RAQ96F46 866 aa18.69■□□□□ 0.58
CCDC40-202ENST00000374876 IL25Q9H293 177 aa18.69■□□□□ 0.58
CCDC40-202ENST00000374876 ISY1Q9ULR0 285 aaKnown RBP18.69■□□□□ 0.58
CCDC40-202ENST00000374876 HSPA4P34932 840 aa18.69■□□□□ 0.58
CCDC40-202ENST00000374876 ANKRD18AQ8IVF6 992 aa18.69■□□□□ 0.58
CCDC40-202ENST00000374876 ECHDC1Q9NTX5 307 aa18.69■□□□□ 0.58
CCDC40-202ENST00000374876 ATP6V0A2Q9Y487 856 aa18.69■□□□□ 0.58
CCDC40-202ENST00000374876 AK9Q5TCS8 1911 aa18.68■□□□□ 0.58
CCDC40-202ENST00000374876 MRE11P49959 708 aa18.68■□□□□ 0.58
CCDC40-202ENST00000374876 RASSF7Q02833 373 aa18.68■□□□□ 0.58
CCDC40-202ENST00000374876 IFIT5Q13325 482 aaKnown RBP18.68■□□□□ 0.58
CCDC40-202ENST00000374876 PKP1Q13835 747 aa18.68■□□□□ 0.58
CCDC40-202ENST00000374876 SP8Q8IXZ3 490 aa18.68■□□□□ 0.58
CCDC40-202ENST00000374876 ZNF594Q96JF6 807 aaPredicted RBP18.68■□□□□ 0.58
CCDC40-202ENST00000374876 ANKRD18BA2A2Z9 1011 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 RABL6Q3YEC7 729 aaPredicted RBP18.67■□□□□ 0.58
CCDC40-202ENST00000374876 MCTP1Q6DN14 999 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 KIAA1211Q6ZU35 1233 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 CDC5LQ99459 802 aaKnown RBP18.67■□□□□ 0.58
CCDC40-202ENST00000374876 NFKBIEO00221 500 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 G3BP1Q13283 466 aaKnown RBP eCLIP18.67■□□□□ 0.58
CCDC40-202ENST00000374876 CCDC57Q2TAC2 916 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 CCDC93Q567U6 631 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 RAD50Q92878 1312 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 RTL9Q8NET4 1388 aa18.67■□□□□ 0.58
CCDC40-202ENST00000374876 SOGA3Q5TF21 947 aa18.66■□□□□ 0.58
CCDC40-202ENST00000374876 AACSQ86V21 672 aa18.66■□□□□ 0.58
CCDC40-202ENST00000374876 TMX4Q9H1E5 349 aaPredicted RBP18.66■□□□□ 0.58
CCDC40-202ENST00000374876 DIAPH3Q9NSV4 1193 aa18.66■□□□□ 0.58
CCDC40-202ENST00000374876 PRELPP51888 382 aa18.66■□□□□ 0.58
CCDC40-202ENST00000374876 CWC27Q6UX04 472 aaKnown RBP18.66■□□□□ 0.58
CCDC40-202ENST00000374876 UPF3BQ9BZI7 483 aaKnown RBP18.66■□□□□ 0.58
CCDC40-202ENST00000374876 DDX49Q9Y6V7 483 aaKnown RBP18.66■□□□□ 0.58
CCDC40-202ENST00000374876 IGHMBP2P38935 993 aaKnown RBP18.65■□□□□ 0.58
CCDC40-202ENST00000374876 CUL4AQ13619 759 aa18.65■□□□□ 0.58
CCDC40-202ENST00000374876 KLHL40Q2TBA0 621 aa18.65■□□□□ 0.58
CCDC40-202ENST00000374876 NOL8Q76FK4 1167 aaKnown RBP18.65■□□□□ 0.58
CCDC40-202ENST00000374876 RTKN2Q8IZC4 609 aa18.65■□□□□ 0.58
CCDC40-202ENST00000374876 KLHDC4Q8TBB5 520 aa18.65■□□□□ 0.58
CCDC40-202ENST00000374876 RUFY2Q8WXA3 655 aa18.65■□□□□ 0.58
CCDC40-202ENST00000374876 MPHOSPH8Q99549 860 aa18.64■□□□□ 0.58
CCDC40-202ENST00000374876 LSG1Q9H089 658 aaKnown RBP18.64■□□□□ 0.58
CCDC40-202ENST00000374876 GRPEL1Q9HAV7 217 aa18.64■□□□□ 0.58
CCDC40-202ENST00000374876 BSDC1Q9NW68 430 aaPredicted RBP18.64■□□□□ 0.58
CCDC40-202ENST00000374876 NSFL1CQ9UNZ2 370 aaKnown RBP18.64■□□□□ 0.58
CCDC40-202ENST00000374876 TAF7LQ5H9L4 462 aa18.64■□□□□ 0.57
CCDC40-202ENST00000374876 CC2D2BQ6DHV5 1058 aa18.64■□□□□ 0.57
CCDC40-202ENST00000374876 TMC4Q7Z404 712 aa18.64■□□□□ 0.57
CCDC40-202ENST00000374876 INTS4Q96HW7 963 aaKnown RBP18.64■□□□□ 0.57
CCDC40-202ENST00000374876 TAOK3Q9H2K8 898 aa18.64■□□□□ 0.57
CCDC40-202ENST00000374876 SASH1O94885 1247 aa18.63■□□□□ 0.57
CCDC40-202ENST00000374876 GPSM2P81274 684 aa18.63■□□□□ 0.57
CCDC40-202ENST00000374876 MPNDQ8N594 471 aa18.63■□□□□ 0.57
CCDC40-202ENST00000374876 ZNF277Q9NRM2 450 aaPredicted RBP18.63■□□□□ 0.57
CCDC40-202ENST00000374876 MINPP1Q9UNW1 487 aa18.63■□□□□ 0.57
CCDC40-202ENST00000374876 ZDHHC9Q9Y397 364 aa18.63■□□□□ 0.57
CCDC40-202ENST00000374876 FER1L6Q2WGJ9 1857 aa18.63■□□□□ 0.57
CCDC40-202ENST00000374876 EVI5LQ96CN4 794 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 SPEF2Q9C093 1822 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 SNED1Q8TER0 1413 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 WTIPA6NIX2 430 aaPredicted RBP18.62■□□□□ 0.57
CCDC40-202ENST00000374876 FKBP4Q02790 459 aaKnown RBP eCLIP18.62■□□□□ 0.57
CCDC40-202ENST00000374876 DPP8Q6V1X1 898 aaPredicted RBP18.62■□□□□ 0.57
CCDC40-202ENST00000374876 LDHAL6AQ6ZMR3 332 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 PANK2Q9BZ23 570 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 PUS3Q9BZE2 481 aaKnown RBP18.62■□□□□ 0.57
CCDC40-202ENST00000374876 SIL1Q9H173 461 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 ANKIB1Q9P2G1 1089 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 SNX14Q9Y5W7 946 aa18.62■□□□□ 0.57
CCDC40-202ENST00000374876 RFX5P48382 616 aaPredicted RBP18.61■□□□□ 0.57
CCDC40-202ENST00000374876 C9orf131Q5VYM1 1079 aa18.61■□□□□ 0.57
CCDC40-202ENST00000374876 EAF2Q96CJ1 260 aaPredicted RBP18.61■□□□□ 0.57
CCDC40-202ENST00000374876 LMBRD1Q9NUN5 540 aa18.61■□□□□ 0.57
CCDC40-202ENST00000374876 HELBQ8NG08 1087 aaPredicted RBP18.6■□□□□ 0.57
CCDC40-202ENST00000374876 PSMD1Q99460 953 aa18.6■□□□□ 0.57
CCDC40-202ENST00000374876 CCDC8Q9H0W5 538 aaPredicted RBP18.6■□□□□ 0.57
CCDC40-202ENST00000374876 CNNM1Q9NRU3 951 aa18.6■□□□□ 0.57
CCDC40-202ENST00000374876 RNF181Q9P0P0 153 aa18.6■□□□□ 0.57
CCDC40-202ENST00000374876 POLLQ9UGP5 575 aa18.6■□□□□ 0.57
CCDC40-202ENST00000374876 CCDC88AQ3V6T2 1871 aa18.59■□□□□ 0.57
CCDC40-202ENST00000374876 LMNB1P20700 586 aa18.59■□□□□ 0.57
CCDC40-202ENST00000374876 LRRC24Q50LG9 513 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms