RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 EDC4Q6P2E9 1401 aaKnown RBP4.77□□□□□ -1.65
MCF2-202ENST00000370573 MYBBP1AQ9BQG0 1328 aaKnown RBP4.76□□□□□ -1.65
MCF2-202ENST00000370573 SPATA31C2B4DYI2 1134 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 GNASQ5JWF2 1037 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.76□□□□□ -1.65
MCF2-202ENST00000370573 AIDAQ96BJ3 306 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 ZMIZ1Q9ULJ6 1067 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 USP6P35125 1406 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 DCCP43146 1447 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 ITSN1Q15811 1721 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 MON2Q7Z3U7 1717 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 MSH6P52701 1360 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 USP17L3A6NCW0 530 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 USP17L4A6NCW7 530 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 USP17L2Q6R6M4 530 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 DNAJC14Q6Y2X3 702 aaPredicted RBP4.76□□□□□ -1.65
MCF2-202ENST00000370573 USP17L1Q7RTZ2 530 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 MORC1Q86VD1 984 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 RUBCNLQ9H714 662 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 PARP3Q9Y6F1 533 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 USP3Q9Y6I4 520 aa4.76□□□□□ -1.65
MCF2-202ENST00000370573 FOXO3O43524 673 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 F11P03951 625 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 FBLN1P23142 703 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 TNNT2P45379 298 aaPredicted RBP4.75□□□□□ -1.65
MCF2-202ENST00000370573 PLA2G4AP47712 749 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 NLRP13Q86W25 1043 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 TRIM22Q8IYM9 498 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 STK32AQ8WU08 396 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 DDX17Q92841 729 aaKnown RBP4.75□□□□□ -1.65
MCF2-202ENST00000370573 MRS2Q9HD23 443 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 SLAIN2Q9P270 581 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 STK17AQ9UEE5 414 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 KIAA1024Q9UPX6 916 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 SMTNP53814 917 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 CLDN10P78369 228 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 XPCQ01831 940 aaPredicted RBP4.75□□□□□ -1.65
MCF2-202ENST00000370573 TBCELQ5QJ74 424 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 TMEM164Q5U3C3 297 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 NFATC2IPQ8NCF5 419 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 RHBDD1Q8TEB9 315 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 MKRN1Q9UHC7 482 aaKnown RBP4.75□□□□□ -1.65
MCF2-202ENST00000370573 NSD2O96028 1365 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 NRKQ7Z2Y5 1582 aa4.75□□□□□ -1.65
MCF2-202ENST00000370573 ATP9BO43861 1147 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 GAS6Q14393 721 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 BRINP3Q76B58 766 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 KRT28Q7Z3Y7 464 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 PNISRQ8TF01 805 aaKnown RBP4.74□□□□□ -1.65
MCF2-202ENST00000370573 WHAMMQ8TF30 809 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 MRRFQ96E11 262 aaKnown RBP4.74□□□□□ -1.65
MCF2-202ENST00000370573 ZNF594Q96JF6 807 aaPredicted RBP4.74□□□□□ -1.65
MCF2-202ENST00000370573 BRD4O60885 1362 aaPredicted RBP4.74□□□□□ -1.65
MCF2-202ENST00000370573 KIF20BQ96Q89 1820 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 A6NJY4 79 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 THBS1P07996 1170 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 MSX1P28360 303 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 WDR44Q5JSH3 913 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 NUTM2GQ5VZR2 741 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 TPCN2Q8NHX9 752 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 NUCKS1Q9H1E3 243 aaKnown RBP4.74□□□□□ -1.65
MCF2-202ENST00000370573 TTC21AQ8NDW8 1320 aa4.74□□□□□ -1.65
MCF2-202ENST00000370573 USP31Q70CQ4 1352 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 A0A1B0GTH6 734 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 H7C1W4 665 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 MTHFSP49914 203 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 TNS4Q8IZW8 715 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 OGFOD1Q8N543 542 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 COG3Q96JB2 828 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 ZNF358Q9NW07 568 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 ANKRD26Q9UPS8 1709 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 LGR5O75473 907 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 SCNN1AP37088 669 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 CCDC102BQ68D86 513 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 FOXR1Q6PIV2 292 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 FAM9BQ8IZU0 186 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 YTHDC1Q96MU7 727 aaKnown RBP4.73□□□□□ -1.65
MCF2-202ENST00000370573 NIFKQ9BYG3 293 aaKnown RBP4.73□□□□□ -1.65
MCF2-202ENST00000370573 POLKQ9UBT6 870 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 OVOS2A0A0J9YW53 1432 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 OVOS2Q6IE36 1432 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 KIF1AQ12756 1690 aa4.73□□□□□ -1.65
MCF2-202ENST00000370573 ZBTB7BO15156 539 aaPredicted RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 ADAMTS2O95450 1211 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 PGBD3Q8N328 593 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 SVOPQ8N4V2 548 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 ABTB2Q8N961 1025 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 PIK3C2AO00443 1686 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 TRPM3Q9HCF6 1732 aaPredicted RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 MARF1Q9Y4F3 1742 aaKnown RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 LZTS3O60299 673 aaPredicted RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 ZNF16P17020 682 aaPredicted RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 RRS1Q15050 365 aaKnown RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 SLC4A9Q96Q91 983 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 DNAAF2Q9NVR5 837 aaKnown RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 IQSEC3Q9UPP2 1182 aaPredicted RBP4.72□□□□□ -1.65
MCF2-202ENST00000370573 NPHP3Q7Z494 1330 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 PXDNQ92626 1479 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 AATKQ6ZMQ8 1374 aa4.72□□□□□ -1.65
MCF2-202ENST00000370573 FAM181BA6NEQ2 426 aa4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms