RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 DNM1Q05193 864 aaKnown RBP10.3□□□□□ -0.76
SYNE1-205ENST00000367251 IFI16Q16666 785 aaKnown RBP10.3□□□□□ -0.76
SYNE1-205ENST00000367251 TERF1P54274 439 aa10.3□□□□□ -0.76
SYNE1-205ENST00000367251 MRPS9P82933 396 aaKnown RBP10.3□□□□□ -0.76
SYNE1-205ENST00000367251 DDX46Q7L014 1031 aaKnown RBP10.3□□□□□ -0.76
SYNE1-205ENST00000367251 DCAF5Q96JK2 942 aa10.3□□□□□ -0.76
SYNE1-205ENST00000367251 SKILP12757 684 aa10.3□□□□□ -0.76
SYNE1-205ENST00000367251 NF2P35240 595 aa10.3□□□□□ -0.76
SYNE1-205ENST00000367251 TRAF1Q13077 416 aa10.3□□□□□ -0.76
SYNE1-205ENST00000367251 RTN1Q16799 776 aa10.3□□□□□ -0.76
SYNE1-205ENST00000367251 LARP6Q9BRS8 491 aaKnown RBP10.3□□□□□ -0.76
SYNE1-205ENST00000367251 TRMT1Q9NXH9 659 aaKnown RBP10.3□□□□□ -0.76
SYNE1-205ENST00000367251 MTIF2P46199 727 aaKnown RBP10.3□□□□□ -0.76
SYNE1-205ENST00000367251 MICU3Q86XE3 530 aa10.3□□□□□ -0.76
SYNE1-205ENST00000367251 SPTLC2O15270 562 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 RNMTO43148 476 aaKnown RBP10.29□□□□□ -0.76
SYNE1-205ENST00000367251 MYO1BO43795 1136 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 TUBBP07437 444 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 UBA7P41226 1012 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 CCDC96Q2M329 555 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 TRMT2AQ8IZ69 625 aaKnown RBP10.29□□□□□ -0.76
SYNE1-205ENST00000367251 LMBR1LQ6UX01 489 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 DDX21Q9NR30 783 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE1-205ENST00000367251 FAM193AP78312 1265 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 TAF12Q16514 161 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 KRT222Q8N1A0 295 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 ABCC4O15439 1325 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 MBD5Q9P267 1494 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 POLD1P28340 1107 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 CCDC186Q7Z3E2 898 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 BIN1O00499 593 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 PRC1O43663 620 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 CEBPAP49715 358 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-205ENST00000367251 BIRC2Q13490 618 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 ZNF354CQ86Y25 554 aa10.29□□□□□ -0.76
SYNE1-205ENST00000367251 FBLN1P23142 703 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 CYLC1P35663 651 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-205ENST00000367251 CETN1Q12798 172 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 LUZP1Q86V48 1076 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 CEP112Q8N8E3 955 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 WWC3Q9ULE0 1092 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 SHROOM2Q13796 1616 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 TSPY2A6NKD2 308 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 RPS6KB1P23443 525 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 HAND2P61296 217 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 NBPF14Q5TI25 921 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 MAP3K19Q56UN5 1328 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 CCDC172P0C7W6 258 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 PRKCSHP14314 528 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-205ENST00000367251 CALML3P27482 149 aa10.28□□□□□ -0.76
SYNE1-205ENST00000367251 GNG11P61952 73 aa10.27□□□□□ -0.76
SYNE1-205ENST00000367251 EP400NLQ6ZTU2 488 aa10.27□□□□□ -0.76
SYNE1-205ENST00000367251 SNRKQ9NRH2 765 aa10.27□□□□□ -0.76
SYNE1-205ENST00000367251 PRDM15P57071 1507 aaPredicted RBP10.27□□□□□ -0.76
SYNE1-205ENST00000367251 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.27□□□□□ -0.76
SYNE1-205ENST00000367251 GCOM1H8Y6P7 765 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-205ENST00000367251 N4BP3O15049 544 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 SLU7O95391 586 aaKnown RBP10.27□□□□□ -0.77
SYNE1-205ENST00000367251 MYZAPP0CAP1 466 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 PANK2Q9BZ23 570 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 TAOK3Q9H2K8 898 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 EXOC1Q9NV70 894 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 SYT1P21579 422 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 SMARCC1Q92922 1105 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-205ENST00000367251 ZRANB1Q9UGI0 708 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 DMRT2Q9Y5R5 561 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 GPTP24298 496 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 IFIT1BQ5T764 474 aaKnown RBP10.27□□□□□ -0.77
SYNE1-205ENST00000367251 TM6SF1Q9BZW5 370 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 UBA5Q9GZZ9 404 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 DNAJC25Q9H1X3 360 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 CENPHQ9H3R5 247 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 FAM135BQ49AJ0 1406 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 PPP1R2P41236 205 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 AOPEPQ8N6M6 819 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 RBM28Q9NW13 759 aaKnown RBP10.27□□□□□ -0.77
SYNE1-205ENST00000367251 SLC4A4Q9Y6R1 1079 aa10.27□□□□□ -0.77
SYNE1-205ENST00000367251 PTPDC1A2A3K4 754 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 UBAP1LF5GYI3 381 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 STAMBPO95630 424 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 ANXA1P04083 346 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 TUBB2AQ13885 445 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 CCDC40Q4G0X9 1142 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 CPLX3Q8WVH0 158 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 FERMT2Q96AC1 680 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 TUBB2BQ9BVA1 445 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 AATKQ6ZMQ8 1374 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 PCDH11XQ9BZA7 1347 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 PCDH11YQ9BZA8 1340 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 SGSM2O43147 1006 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 ERMNQ8TAM6 284 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 ELP1O95163 1332 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 MACROD2A1Z1Q3 448 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 TRIM75PA6NK02 468 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 CCDC175P0C221 793 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 KRT83P78385 493 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 FAM160A1Q05DH4 1040 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 RRAGBQ5VZM2 374 aa10.26□□□□□ -0.77
SYNE1-205ENST00000367251 TDRD12Q587J7 1177 aaKnown RBP10.25□□□□□ -0.77
SYNE1-205ENST00000367251 DDX12PQ92771 950 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms