RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PTPN21Q16825 1174 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 SSX2IPQ9Y2D8 614 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 GCP02774 474 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 NMIQ13287 307 aaPredicted RBP8.4□□□□□ -1.07
VPS13A-202ENST00000357409 AMOTQ4VCS5 1084 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 MAPKAPK5Q8IW41 473 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 CETN2P41208 172 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 PHLDB2Q86SQ0 1253 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 SPDYE3A6NKU9 549 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 LLGL1Q15334 1064 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 PPP1R14CQ8TAE6 165 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 HYPKQ9NX55 129 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 STK32BQ9NY57 414 aa8.4□□□□□ -1.07
VPS13A-202ENST00000357409 NSMFQ6X4W1 530 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 GPATCH11Q8N954 259 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 VPS16Q9H269 839 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 ARPP19P56211 112 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 PDE3AQ14432 1141 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 CEP63Q96MT8 703 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 DNM1Q05193 864 aaKnown RBP8.39□□□□□ -1.07
VPS13A-202ENST00000357409 NELFCDQ8IXH7 590 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 PRDM5Q9NQX1 630 aaPredicted RBP8.39□□□□□ -1.07
VPS13A-202ENST00000357409 EXOC1Q9NV70 894 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 SYNJ2BP-COX16A0A087WUM0 186 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 A0A1W2PRG0 241 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 N4BP3O15049 544 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 MBD3O95983 291 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 GOLGA8HP0CJ92 632 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 KRT32Q14532 448 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 ZNF653Q96CK0 615 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 COX16Q9P0S2 106 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 H0YIN7 160 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 PAFAH1B1P43034 410 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 NCAPH2Q6IBW4 605 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 EVI5LQ96CN4 794 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 NACA2Q9H009 215 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 TBCAO75347 108 aaKnown RBP8.39□□□□□ -1.07
VPS13A-202ENST00000357409 SLF2Q8IX21 1173 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 FAM13AO94988 1023 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 LDHBP07195 334 aaKnown RBP8.39□□□□□ -1.07
VPS13A-202ENST00000357409 KCNA6P17658 529 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 TEX11Q8IYF3 940 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 METTL13Q8N6R0 699 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 BZW2Q9Y6E2 419 aaKnown RBP8.39□□□□□ -1.07
VPS13A-202ENST00000357409 MYOM3Q5VTT5 1437 aa8.39□□□□□ -1.07
VPS13A-202ENST00000357409 SDSP20132 328 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 GEN1Q17RS7 908 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 RAB34Q9BZG1 259 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 MXRA7P84157 204 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 RTN1Q16799 776 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 CADPS2Q86UW7 1296 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 HAUS7Q99871 368 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 TRIM6Q9C030 488 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 EZRP15311 586 aaKnown RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 CCT6AP40227 531 aaKnown RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 RTEL1Q9NZ71 1219 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 SPDYE16A6NNV3 312 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 KIF5CO60282 957 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 SPDYE2Q495Y8 402 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 DPP8Q6V1X1 898 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 NCAPG2Q86XI2 1143 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 TGFBRAP1Q8WUH2 860 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 ZNF668Q96K58 619 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 ANKRD30BQ9BXX2 1392 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 PSDA5PKW4 1024 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 UBASH3AP57075 661 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 PSMD6Q15008 389 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 KCNQ3O43525 872 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 ANO10Q9NW15 660 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 MBD4O95243 580 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 GABPAQ06546 454 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 SMCR8Q8TEV9 937 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 CCDC196A0A1B0GTZ2 297 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 ASIC1P78348 528 aa8.38□□□□□ -1.07
VPS13A-202ENST00000357409 ZSCAN31Q96LW9 406 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 THRAP3Q9Y2W1 955 aaKnown RBP8.38□□□□□ -1.07
VPS13A-202ENST00000357409 A0A1B0GVL5 298 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 GRM8O00222 908 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 CCDC114Q96M63 670 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 ECHDC1Q9NTX5 307 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 MYO1AQ9UBC5 1043 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 ADCY5O95622 1261 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 GTF2F1P35269 517 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 EIF4A2Q14240 407 aaKnown RBP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 MIGA2Q7L4E1 593 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 EHMT1Q9H9B1 1298 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 NCOA5Q9HCD5 579 aaKnown RBP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 LZTFL1Q9NQ48 299 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 TSTA3Q13630 321 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 SELENOSQ9BQE4 189 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 FNDC3AQ9Y2H6 1198 aaKnown RBP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 PPIP5K2O43314 1243 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 ITGA6P23229 1130 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 CAPN12Q6ZSI9 719 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 IFT81Q8WYA0 676 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 SPAG5Q96R06 1193 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 EYA1Q99502 592 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 VWA3AA6NCI4 1184 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 CCNT1O60563 726 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms