RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 POTEFA5A3E0 1075 aa14.56□□□□□ -0.08
RTN3-204ENST00000354497 USP17L3A6NCW0 530 aa14.56□□□□□ -0.08
RTN3-204ENST00000354497 USP17L4A6NCW7 530 aa14.56□□□□□ -0.08
RTN3-204ENST00000354497 USP17L1Q7RTZ2 530 aa14.56□□□□□ -0.08
RTN3-204ENST00000354497 BABAM1Q9NWV8 329 aa14.56□□□□□ -0.08
RTN3-204ENST00000354497 SSUH2Q9Y2M2 353 aa14.56□□□□□ -0.08
RTN3-204ENST00000354497 LMOD3Q0VAK6 560 aa14.55□□□□□ -0.08
RTN3-204ENST00000354497 NOM1Q5C9Z4 860 aaKnown RBP14.55□□□□□ -0.08
RTN3-204ENST00000354497 ARMC9Q7Z3E5 817 aa14.55□□□□□ -0.08
RTN3-204ENST00000354497 MXD3Q9BW11 206 aa14.55□□□□□ -0.08
RTN3-204ENST00000354497 SASH1O94885 1247 aa14.54□□□□□ -0.08
RTN3-204ENST00000354497 PTPN12Q05209 780 aaKnown RBP14.54□□□□□ -0.08
RTN3-204ENST00000354497 NEUROD2Q15784 382 aa14.54□□□□□ -0.08
RTN3-204ENST00000354497 OGFOD1Q8N543 542 aa14.54□□□□□ -0.08
RTN3-204ENST00000354497 GMLQ99445 158 aa14.54□□□□□ -0.08
RTN3-204ENST00000354497 ZNF609O15014 1411 aa14.54□□□□□ -0.08
RTN3-204ENST00000354497 XDHP47989 1333 aa14.53□□□□□ -0.08
RTN3-204ENST00000354497 CCDC152Q4G0S7 254 aa14.53□□□□□ -0.08
RTN3-204ENST00000354497 JARID2Q92833 1246 aaPredicted RBP14.53□□□□□ -0.08
RTN3-204ENST00000354497 ALDH1A1P00352 501 aa14.52□□□□□ -0.08
RTN3-204ENST00000354497 HSP90B1P14625 803 aaKnown RBP14.52□□□□□ -0.08
RTN3-204ENST00000354497 ATP2B4P23634 1241 aa14.52□□□□□ -0.08
RTN3-204ENST00000354497 INTS3Q68E01 1043 aaKnown RBP14.52□□□□□ -0.08
RTN3-204ENST00000354497 OTOP1Q7RTM1 612 aa14.52□□□□□ -0.08
RTN3-204ENST00000354497 RIC3Q7Z5B4 369 aa14.52□□□□□ -0.08
RTN3-204ENST00000354497 ANKRD18AQ8IVF6 992 aa14.52□□□□□ -0.08
RTN3-204ENST00000354497 DBF4Q9UBU7 674 aaPredicted RBP14.52□□□□□ -0.08
RTN3-204ENST00000354497 ANGEL1Q9UNK9 670 aaKnown RBP14.52□□□□□ -0.08
RTN3-204ENST00000354497 SPDYE4A6NLX3 237 aa14.51□□□□□ -0.09
RTN3-204ENST00000354497 TMPOP42166 694 aaKnown RBP14.51□□□□□ -0.09
RTN3-204ENST00000354497 GOLGA2Q08379 1002 aa14.51□□□□□ -0.09
RTN3-204ENST00000354497 SPRYD7Q5W111 196 aa14.51□□□□□ -0.09
RTN3-204ENST00000354497 PODNQ7Z5L7 613 aa14.51□□□□□ -0.09
RTN3-204ENST00000354497 ZBTB38Q8NAP3 1195 aaPredicted RBP14.51□□□□□ -0.09
RTN3-204ENST00000354497 MYD88Q99836 296 aa14.51□□□□□ -0.09
RTN3-204ENST00000354497 CFHR5Q9BXR6 569 aa14.51□□□□□ -0.09
RTN3-204ENST00000354497 FZD1Q9UP38 647 aa14.51□□□□□ -0.09
RTN3-204ENST00000354497 WNT10BO00744 389 aa14.5□□□□□ -0.09
RTN3-204ENST00000354497 FXR1P51114 621 aaKnown RBP eCLIP14.5□□□□□ -0.09
RTN3-204ENST00000354497 HYPKQ9NX55 129 aa14.5□□□□□ -0.09
RTN3-204ENST00000354497 MANSC4A6NHS7 340 aaPredicted RBP14.49□□□□□ -0.09
RTN3-204ENST00000354497 EN2P19622 333 aaPredicted RBP14.49□□□□□ -0.09
RTN3-204ENST00000354497 IFNL1Q8IU54 200 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 APOBEC3FQ8IUX4 373 aaKnown RBP14.49□□□□□ -0.09
RTN3-204ENST00000354497 CD99L2Q8TCZ2 262 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 SLC10A4Q96EP9 437 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 PSME4Q14997 1843 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 WTIPA6NIX2 430 aaPredicted RBP14.49□□□□□ -0.09
RTN3-204ENST00000354497 CHL1O00533 1208 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 PDE8AO60658 829 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 TRIM28Q13263 835 aaKnown RBP14.49□□□□□ -0.09
RTN3-204ENST00000354497 DACT2Q5SW24 774 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 CCDC146Q8IYE0 955 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 ERO1AQ96HE7 468 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 PTPN22Q9Y2R2 807 aa14.49□□□□□ -0.09
RTN3-204ENST00000354497 MYO3BQ8WXR4 1341 aa14.48□□□□□ -0.09
RTN3-204ENST00000354497 MED23Q9ULK4 1368 aa14.48□□□□□ -0.09
RTN3-204ENST00000354497 KIAA0825Q8IV33 1275 aa14.48□□□□□ -0.09
RTN3-204ENST00000354497 IGF2BP3O00425 579 aaKnown RBP eCLIP14.47□□□□□ -0.09
RTN3-204ENST00000354497 PCCAP05165 728 aaPredicted RBP14.47□□□□□ -0.09
RTN3-204ENST00000354497 INHBEP58166 350 aa14.47□□□□□ -0.09
RTN3-204ENST00000354497 LDLRAD1Q5T700 205 aa14.47□□□□□ -0.09
RTN3-204ENST00000354497 CDC5LQ99459 802 aaKnown RBP14.47□□□□□ -0.09
RTN3-204ENST00000354497 TMEM106CQ9BVX2 250 aa14.47□□□□□ -0.09
RTN3-204ENST00000354497 EFCC1Q9HA90 598 aa14.47□□□□□ -0.09
RTN3-204ENST00000354497 COLQQ9Y215 455 aaPredicted RBP14.47□□□□□ -0.09
RTN3-204ENST00000354497 HOXB7P09629 217 aa14.46□□□□□ -0.09
RTN3-204ENST00000354497 STRIP1Q5VSL9 837 aa14.46□□□□□ -0.09
RTN3-204ENST00000354497 DUSP27Q5VZP5 1158 aa14.46□□□□□ -0.09
RTN3-204ENST00000354497 WNK4Q96J92 1243 aa14.46□□□□□ -0.09
RTN3-204ENST00000354497 CLMNQ96JQ2 1002 aa14.46□□□□□ -0.09
RTN3-204ENST00000354497 PHAXQ9H814 394 aaKnown RBP14.46□□□□□ -0.09
RTN3-204ENST00000354497 CWC25Q9NXE8 425 aaPredicted RBP14.46□□□□□ -0.09
RTN3-204ENST00000354497 CCT4P50991 539 aaKnown RBP14.45□□□□□ -0.1
RTN3-204ENST00000354497 CRHR2Q13324 411 aa14.45□□□□□ -0.1
RTN3-204ENST00000354497 UBE2Q2Q8WVN8 375 aa14.45□□□□□ -0.1
RTN3-204ENST00000354497 COA1Q9GZY4 146 aa14.45□□□□□ -0.1
RTN3-204ENST00000354497 MYCP01106 439 aaPredicted RBP14.44□□□□□ -0.1
RTN3-204ENST00000354497 ZBTB48P10074 688 aaPredicted RBP14.44□□□□□ -0.1
RTN3-204ENST00000354497 CTSWP56202 376 aa14.44□□□□□ -0.1
RTN3-204ENST00000354497 TTLL5Q6EMB2 1281 aa14.44□□□□□ -0.1
RTN3-204ENST00000354497 OTUD7BQ6GQQ9 843 aa14.44□□□□□ -0.1
RTN3-204ENST00000354497 CCDC191Q8NCU4 936 aa14.44□□□□□ -0.1
RTN3-204ENST00000354497 DEFB129Q9H1M3 183 aa14.44□□□□□ -0.1
RTN3-204ENST00000354497 MINPP1Q9UNW1 487 aa14.44□□□□□ -0.1
RTN3-204ENST00000354497 PPP1R12BO60237 982 aaPredicted RBP14.43□□□□□ -0.1
RTN3-204ENST00000354497 GTF2IP78347 998 aa14.43□□□□□ -0.1
RTN3-204ENST00000354497 DLGAP5Q15398 846 aa14.43□□□□□ -0.1
RTN3-204ENST00000354497 SLC4A8Q2Y0W8 1093 aa14.43□□□□□ -0.1
RTN3-204ENST00000354497 ARMC5Q96C12 935 aa14.43□□□□□ -0.1
RTN3-204ENST00000354497 COL1A1P02452 1464 aaPredicted RBP14.42□□□□□ -0.1
RTN3-204ENST00000354497 ELL2O00472 640 aaPredicted RBP14.42□□□□□ -0.1
RTN3-204ENST00000354497 SP3Q02447 781 aa14.42□□□□□ -0.1
RTN3-204ENST00000354497 TXNRD3Q86VQ6 643 aa14.42□□□□□ -0.1
RTN3-204ENST00000354497 GREM2Q9H772 168 aa14.42□□□□□ -0.1
RTN3-204ENST00000354497 VEZTQ9HBM0 779 aa14.42□□□□□ -0.1
RTN3-204ENST00000354497 TRIM35Q9UPQ4 493 aa14.42□□□□□ -0.1
RTN3-204ENST00000354497 SPEF2Q9C093 1822 aa14.42□□□□□ -0.1
RTN3-204ENST00000354497 RBBP6Q7Z6E9 1792 aaKnown RBP14.42□□□□□ -0.1
RTN3-204ENST00000354497 CLRN2A0PK11 232 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms