RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 NEUROD6Q96NK8 337 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 XPO4Q9C0E2 1151 aaKnown RBP12.93□□□□□ -0.34
SYNE1-202ENST00000347037 POLR3DP05423 398 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-202ENST00000347037 ATP5JP18859 108 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 SFPQP23246 707 aaKnown RBP eCLIP12.92□□□□□ -0.34
SYNE1-202ENST00000347037 STK38Q15208 465 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 DPCR1Q3MIW9 517 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 TAF3Q5VWG9 929 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 DHX32Q7L7V1 743 aaKnown RBP12.92□□□□□ -0.34
SYNE1-202ENST00000347037 SMARCC2Q8TAQ2 1214 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 ZNF609O15014 1411 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 DDX21Q9NR30 783 aaKnown RBP eCLIP12.92□□□□□ -0.34
SYNE1-202ENST00000347037 PCDHA7Q9UN72 937 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 A0A0G2JLW4 131 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 ZBTB22O15209 634 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 LRRN4CLQ8ND94 238 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 XAGE3Q8WTP9 111 aa12.92□□□□□ -0.34
SYNE1-202ENST00000347037 LLPHQ9BRT6 129 aaKnown RBP12.92□□□□□ -0.34
SYNE1-202ENST00000347037 NEURL1BA8MQ27 555 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 GOLIM4O00461 696 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 NRDCO43847 1150 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 KCNA6P17658 529 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 NDUFA8P51970 172 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 NBPF11Q86T75 865 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 ENGASEQ8NFI3 743 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 PPP1R13BQ96KQ4 1090 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 GCKRQ14397 625 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 E4F1Q66K89 784 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-202ENST00000347037 COPS6Q7L5N1 327 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 UBE3BQ7Z3V4 1068 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 RAB11FIP4Q86YS3 637 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 KIF2AO00139 706 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-202ENST00000347037 PSME1Q06323 249 aa12.91□□□□□ -0.34
SYNE1-202ENST00000347037 CCDC66A2RUB6 948 aa12.9□□□□□ -0.34
SYNE1-202ENST00000347037 PHF8Q9UPP1 1060 aa12.9□□□□□ -0.34
SYNE1-202ENST00000347037 ATP5J2-PTCD1G3V325 749 aa12.9□□□□□ -0.34
SYNE1-202ENST00000347037 PTCD1O75127 700 aaKnown RBP12.9□□□□□ -0.34
SYNE1-202ENST00000347037 HMGB1P09429 215 aaKnown RBP12.9□□□□□ -0.34
SYNE1-202ENST00000347037 TPM4P67936 248 aa12.9□□□□□ -0.34
SYNE1-202ENST00000347037 AMOTQ4VCS5 1084 aa12.9□□□□□ -0.34
SYNE1-202ENST00000347037 ARMCX5Q6P1M9 558 aa12.9□□□□□ -0.34
SYNE1-202ENST00000347037 ZNF446Q9NWS9 450 aa12.9□□□□□ -0.34
SYNE1-202ENST00000347037 LMOD1P29536 600 aaPredicted RBP12.9□□□□□ -0.35
SYNE1-202ENST00000347037 ARHGAP29Q52LW3 1261 aa12.9□□□□□ -0.35
SYNE1-202ENST00000347037 JCADQ9P266 1359 aa12.89□□□□□ -0.35
SYNE1-202ENST00000347037 DNAI1Q9UI46 699 aa12.89□□□□□ -0.35
SYNE1-202ENST00000347037 CLIC4Q9Y696 253 aa12.89□□□□□ -0.35
SYNE1-202ENST00000347037 UTYO14607 1347 aa12.89□□□□□ -0.35
SYNE1-202ENST00000347037 ERBB3P21860 1342 aa12.89□□□□□ -0.35
SYNE1-202ENST00000347037 ILDR1Q86SU0 546 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-202ENST00000347037 FMR1NBQ8N0W7 255 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-202ENST00000347037 FAM177A1Q8N128 213 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-202ENST00000347037 CCDC150Q8NCX0 1101 aa12.89□□□□□ -0.35
SYNE1-202ENST00000347037 NOL10Q9BSC4 688 aaKnown RBP12.89□□□□□ -0.35
SYNE1-202ENST00000347037 KIAA1468Q9P260 1216 aa12.89□□□□□ -0.35
SYNE1-202ENST00000347037 SLC3A2P08195 630 aaKnown RBP12.89□□□□□ -0.35
SYNE1-202ENST00000347037 PTPN12Q05209 780 aaKnown RBP12.89□□□□□ -0.35
SYNE1-202ENST00000347037 BMS1Q14692 1282 aaKnown RBP12.89□□□□□ -0.35
SYNE1-202ENST00000347037 E7EWF7 191 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 PTPN21Q16825 1174 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 OSBPL5Q9H0X9 879 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-202ENST00000347037 GPHNQ9NQX3 736 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-202ENST00000347037 IMPACTQ9P2X3 320 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 PXDNQ92626 1479 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 TRPM3Q9HCF6 1732 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-202ENST00000347037 PDIA3P30101 505 aaKnown RBP12.88□□□□□ -0.35
SYNE1-202ENST00000347037 PDIA6Q15084 440 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 HAUS7Q99871 368 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 CLCN6P51797 869 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 ESCO1Q5FWF5 840 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 MNS1Q8NEH6 495 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 BBXQ8WY36 941 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-202ENST00000347037 TRERF1Q96PN7 1200 aa12.88□□□□□ -0.35
SYNE1-202ENST00000347037 KDM3BQ7LBC6 1761 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 CARMIL3Q8ND23 1372 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 CDK11BP21127 795 aaKnown RBP12.87□□□□□ -0.35
SYNE1-202ENST00000347037 HAND2P61296 217 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 ADALQ6DHV7 355 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 TTLL5Q6EMB2 1281 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 KBTBD3Q8NAB2 608 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 COPRSQ9NQ92 184 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 GJB4Q9NTQ9 266 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYNE1-202ENST00000347037 POLR3GO15318 223 aaPredicted RBP12.87□□□□□ -0.35
SYNE1-202ENST00000347037 UBXN4Q92575 508 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 C8orf76Q96K31 380 aa12.87□□□□□ -0.35
SYNE1-202ENST00000347037 URI1O94763 535 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-202ENST00000347037 GOLGA8FQ08AF8 430 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 GOLGA8DPQ0D2H9 430 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 ATL3Q6DD88 541 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 SYNE3Q6ZMZ3 975 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 METTL22Q9BUU2 404 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-202ENST00000347037 TMX1Q9H3N1 280 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 A0A087WZG4 1122 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 SPTLC2O15270 562 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 TIMM10P62072 90 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 MED1Q15648 1581 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-202ENST00000347037 ANKRD13DQ6ZTN6 518 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 ANKARQ7Z5J8 1434 aa12.86□□□□□ -0.35
SYNE1-202ENST00000347037 ANKRD24Q8TF21 1146 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms