RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 PTPRMP28827 1452 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 HIP1O00291 1037 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 HSP90AB4PQ58FF6 505 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 RHPN1Q8TCX5 695 aa21.38■■□□□ 1.01
SMPD1-201ENST00000342245 VWA3AA6NCI4 1184 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 EPC1Q9H2F5 836 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 TMEM131LA2VDJ0 1609 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 IKBKBO14920 756 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 GNG11P61952 73 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 CNPY4Q8N129 248 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 CEP112Q8N8E3 955 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 STK31Q9BXU1 1019 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 FAN1Q9Y2M0 1017 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 PPP2R2CQ9Y2T4 447 aa21.37■■□□□ 1.01
SMPD1-201ENST00000342245 XRN1Q8IZH2 1706 aaKnown RBP21.36■■□□□ 1.01
SMPD1-201ENST00000342245 MSANTD4Q8NCY6 345 aa21.36■■□□□ 1.01
SMPD1-201ENST00000342245 ERCC4Q92889 916 aaPredicted RBP21.36■■□□□ 1.01
SMPD1-201ENST00000342245 AKAP2Q9Y2D5 859 aa21.36■■□□□ 1.01
SMPD1-201ENST00000342245 FANCGO15287 622 aa21.36■■□□□ 1.01
SMPD1-201ENST00000342245 RPS6KB1P23443 525 aa21.36■■□□□ 1.01
SMPD1-201ENST00000342245 MICALL1Q8N3F8 863 aa21.36■■□□□ 1.01
SMPD1-201ENST00000342245 GOLPH3LQ9H4A5 285 aa21.36■■□□□ 1.01
SMPD1-201ENST00000342245 L1RE1Q9UN81 338 aa21.36■■□□□ 1.01
SMPD1-201ENST00000342245 ERLIN2O94905 339 aa21.35■■□□□ 1.01
SMPD1-201ENST00000342245 MCM6Q14566 821 aa21.35■■□□□ 1.01
SMPD1-201ENST00000342245 NAA16Q6N069 864 aaPredicted RBP21.35■■□□□ 1.01
SMPD1-201ENST00000342245 SRGAP1Q7Z6B7 1085 aa21.35■■□□□ 1.01
SMPD1-201ENST00000342245 RBM8AQ9Y5S9 174 aaKnown RBP21.35■■□□□ 1.01
SMPD1-201ENST00000342245 SETQ01105 290 aaPredicted RBP21.35■■□□□ 1.01
SMPD1-201ENST00000342245 G2E3Q7L622 706 aa21.35■■□□□ 1.01
SMPD1-201ENST00000342245 MAP4K1Q92918 833 aa21.35■■□□□ 1.01
SMPD1-201ENST00000342245 CHMP4BP1P59074 171 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 POLA2Q14181 598 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 CYB5RLQ6IPT4 315 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 CNNM3Q8NE01 707 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 BRF1Q92994 677 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 A1CFQ9NQ94 594 aaKnown RBP21.34■■□□□ 1.01
SMPD1-201ENST00000342245 KIAA1468Q9P260 1216 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 FANCCQ00597 558 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 STAG1Q8WVM7 1258 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 SDF4Q9BRK5 362 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 EMILIN1Q9Y6C2 1016 aa21.34■■□□□ 1.01
SMPD1-201ENST00000342245 SURF6O75683 361 aaKnown RBP21.33■■□□□ 1.01
SMPD1-201ENST00000342245 UBTFL1P0CB47 393 aaPredicted RBP21.33■■□□□ 1.01
SMPD1-201ENST00000342245 CALRP27797 417 aaKnown RBP21.33■■□□□ 1.01
SMPD1-201ENST00000342245 HSP90AB3PQ58FF7 597 aa21.33■■□□□ 1.01
SMPD1-201ENST00000342245 FSIP1Q8NA03 581 aa21.33■■□□□ 1.01
SMPD1-201ENST00000342245 HMG20BQ9P0W2 317 aa21.33■■□□□ 1.01
SMPD1-201ENST00000342245 ADD1P35611 737 aaKnown RBP21.33■■□□□ 1
SMPD1-201ENST00000342245 MNAT1P51948 309 aa21.33■■□□□ 1
SMPD1-201ENST00000342245 NLRP12P59046 1061 aa21.33■■□□□ 1
SMPD1-201ENST00000342245 EGFL6Q8IUX8 553 aa21.33■■□□□ 1
SMPD1-201ENST00000342245 KIFC2Q96AC6 838 aa21.33■■□□□ 1
SMPD1-201ENST00000342245 SNRKQ9NRH2 765 aa21.33■■□□□ 1
SMPD1-201ENST00000342245 SLC27A2O14975 620 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 POTEDQ86YR6 584 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 CTCFLQ8NI51 663 aaPredicted RBP21.32■■□□□ 1
SMPD1-201ENST00000342245 MRPS27Q92552 414 aaKnown RBP21.32■■□□□ 1
SMPD1-201ENST00000342245 GPATCH3Q96I76 525 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 LLPHQ9BRT6 129 aaKnown RBP21.32■■□□□ 1
SMPD1-201ENST00000342245 CDK19Q9BWU1 502 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 CABP1Q9NZU7 370 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 CRB1P82279 1406 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 A0A1W2PQ27 194 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 A0A1W2PQ64 194 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 A0A1W2PQD8 194 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 VIPAS39Q9H9C1 493 aa21.32■■□□□ 1
SMPD1-201ENST00000342245 DTNBO60941 627 aa21.31■■□□□ 1
SMPD1-201ENST00000342245 FMR1NBQ8N0W7 255 aaPredicted RBP21.31■■□□□ 1
SMPD1-201ENST00000342245 EVI5LQ96CN4 794 aa21.31■■□□□ 1
SMPD1-201ENST00000342245 CCDC189A1A4V9 331 aa21.31■■□□□ 1
SMPD1-201ENST00000342245 STX10O60499 249 aa21.31■■□□□ 1
SMPD1-201ENST00000342245 IFIT2P09913 472 aaKnown RBP21.31■■□□□ 1
SMPD1-201ENST00000342245 TOB2Q14106 344 aaPredicted RBP21.31■■□□□ 1
SMPD1-201ENST00000342245 CACNA1FO60840 1977 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 NRKQ7Z2Y5 1582 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 WDR24Q96S15 920 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 CUTAO60888 179 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 KRT32Q14532 448 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 TTLL5Q6EMB2 1281 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 VSTM4Q8IW00 320 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.3■■□□□ 1
SMPD1-201ENST00000342245 AFAP1L1Q8TED9 768 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 CCDC102AQ96A19 550 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 ANKZF1Q9H8Y5 726 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 RAI14Q9P0K7 980 aa21.3■■□□□ 1
SMPD1-201ENST00000342245 C21orf2O43822 256 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 TOP1P11387 765 aaKnown RBP21.29■■□□□ 1
SMPD1-201ENST00000342245 FBLN1P23142 703 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 FLIIQ13045 1269 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 NCAPHQ15003 741 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 DPCR1Q3MIW9 517 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 DHX58Q96C10 678 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 BICC1Q9H694 974 aaKnown RBP21.29■■□□□ 1
SMPD1-201ENST00000342245 EDC4Q6P2E9 1401 aaKnown RBP21.29■■□□□ 1
SMPD1-201ENST00000342245 HNRNPH1P31943 449 aaKnown RBP21.29■■□□□ 1
SMPD1-201ENST00000342245 UBASH3AP57075 661 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 CASP8Q14790 479 aa21.29■■□□□ 1
SMPD1-201ENST00000342245 PPP1R12AO14974 1030 aaPredicted RBP21.28■■□□□ 1
SMPD1-201ENST00000342245 ME1P48163 572 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms