RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 SCN11AQ9UI33 1791 aa13.87□□□□□ -0.19
RTN3-203ENST00000341307 CUL4AQ13619 759 aa13.87□□□□□ -0.19
RTN3-203ENST00000341307 SH3BP1Q9Y3L3 701 aa13.87□□□□□ -0.19
RTN3-203ENST00000341307 RPAP1Q9BWH6 1393 aaPredicted RBP13.86□□□□□ -0.19
RTN3-203ENST00000341307 CCDC171Q6TFL3 1326 aa13.86□□□□□ -0.19
RTN3-203ENST00000341307 SEMA3FQ13275 785 aa13.86□□□□□ -0.19
RTN3-203ENST00000341307 PDIA6Q15084 440 aa13.86□□□□□ -0.19
RTN3-203ENST00000341307 PTPN14Q15678 1187 aa13.86□□□□□ -0.19
RTN3-203ENST00000341307 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.86□□□□□ -0.19
RTN3-203ENST00000341307 EIF3CLB5ME19 914 aaKnown RBP13.86□□□□□ -0.19
RTN3-203ENST00000341307 ATP6V1AP38606 617 aa13.86□□□□□ -0.19
RTN3-203ENST00000341307 PPP1R42Q7Z4L9 355 aa13.86□□□□□ -0.19
RTN3-203ENST00000341307 DCAF5Q96JK2 942 aa13.86□□□□□ -0.19
RTN3-203ENST00000341307 EIF3CQ99613 913 aaKnown RBP13.86□□□□□ -0.19
RTN3-203ENST00000341307 C5P01031 1676 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 N4BP2Q86UW6 1770 aaPredicted RBP13.85□□□□□ -0.19
RTN3-203ENST00000341307 ACTN2P35609 894 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 CNPY2Q9Y2B0 182 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 USP16Q9Y5T5 823 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 NWD2Q9ULI1 1742 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 SDSP20132 328 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 MAP2K2P36507 400 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 CCDC144BQ3MJ40 725 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 CCDC144CPQ8IYA2 1237 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 CEP89Q96ST8 783 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 PSD3Q9NYI0 1048 aa13.85□□□□□ -0.19
RTN3-203ENST00000341307 SASH3O75995 380 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 CABP4P57796 275 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 PLA2G4DQ86XP0 818 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 LRRCC1Q9C099 1032 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 IL1RAPL2Q9NP60 686 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 SRGAP3O43295 1099 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 UBE2HP62256 183 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 KSR2Q6VAB6 950 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 MMS22LQ6ZRQ5 1243 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 DRC7Q8IY82 874 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 ANKRD20A12PQ8NF67 263 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 DDX54Q8TDD1 881 aaKnown RBP13.84□□□□□ -0.19
RTN3-203ENST00000341307 L2HGDHQ9H9P8 463 aa13.84□□□□□ -0.19
RTN3-203ENST00000341307 SEC31AO94979 1220 aaKnown RBP13.83□□□□□ -0.2
RTN3-203ENST00000341307 ZNF75DP51815 510 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 ARHGAP29Q52LW3 1261 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 FOXR1Q6PIV2 292 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 TTC5Q8N0Z6 440 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 FAM200AQ8TCP9 573 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 PPM1EQ8WY54 764 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 EXOC4Q96A65 974 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 ZSCAN16Q9H4T2 348 aaPredicted RBP13.83□□□□□ -0.2
RTN3-203ENST00000341307 DDX21Q9NR30 783 aaKnown RBP eCLIP13.83□□□□□ -0.2
RTN3-203ENST00000341307 PKD1L3Q7Z443 1732 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 LMAN1P49257 510 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 PDE1AP54750 535 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 TMCO3Q6UWJ1 677 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 LUZP1Q86V48 1076 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 HYPKQ9NX55 129 aa13.83□□□□□ -0.2
RTN3-203ENST00000341307 ABCC6O95255 1503 aa13.82□□□□□ -0.2
RTN3-203ENST00000341307 SURF6O75683 361 aaKnown RBP13.82□□□□□ -0.2
RTN3-203ENST00000341307 CPP00450 1065 aa13.82□□□□□ -0.2
RTN3-203ENST00000341307 ZCRB1Q8TBF4 217 aaKnown RBP13.82□□□□□ -0.2
RTN3-203ENST00000341307 SSH3Q8TE77 659 aa13.82□□□□□ -0.2
RTN3-203ENST00000341307 AK7Q96M32 723 aa13.82□□□□□ -0.2
RTN3-203ENST00000341307 ADAM21Q9UKJ8 722 aa13.82□□□□□ -0.2
RTN3-203ENST00000341307 PPP1R12AO14974 1030 aaPredicted RBP13.82□□□□□ -0.2
RTN3-203ENST00000341307 CORO7P57737 925 aa13.82□□□□□ -0.2
RTN3-203ENST00000341307 LRCH2Q5VUJ6 765 aa13.82□□□□□ -0.2
RTN3-203ENST00000341307 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.82□□□□□ -0.2
RTN3-203ENST00000341307 C9orf78Q9NZ63 289 aaPredicted RBP13.82□□□□□ -0.2
RTN3-203ENST00000341307 ONECUT3O60422 494 aaPredicted RBP13.81□□□□□ -0.2
RTN3-203ENST00000341307 TBC1D8O95759 1140 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 CCDC93Q567U6 631 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 COPS6Q7L5N1 327 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 XAGE3Q8WTP9 111 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 INTS4Q96HW7 963 aaKnown RBP13.81□□□□□ -0.2
RTN3-203ENST00000341307 CCDC192P0DO97 292 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 NEK4P51957 841 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 SMC1AQ14683 1233 aaKnown RBP13.81□□□□□ -0.2
RTN3-203ENST00000341307 ARID5BQ14865 1188 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 MAP9Q49MG5 647 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 NUTM1Q86Y26 1132 aa13.81□□□□□ -0.2
RTN3-203ENST00000341307 CCDC196A0A1B0GTZ2 297 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 IL2RBP14784 551 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 PPP2R5AQ15172 486 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 RIC3Q7Z5B4 369 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 TICAM2Q86XR7 235 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 LRRC8AQ8IWT6 810 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 ORC3Q9UBD5 711 aaPredicted RBP13.8□□□□□ -0.2
RTN3-203ENST00000341307 MRVI1Q9Y6F6 885 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 SALL3Q9BXA9 1300 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 WDR33Q9C0J8 1336 aaKnown RBP13.8□□□□□ -0.2
RTN3-203ENST00000341307 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.8□□□□□ -0.2
RTN3-203ENST00000341307 ATP8B1O43520 1251 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 IVLP07476 585 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 SNRPA1P09661 255 aaKnown RBP13.8□□□□□ -0.2
RTN3-203ENST00000341307 CASTP20810 708 aaKnown RBP13.8□□□□□ -0.2
RTN3-203ENST00000341307 POLA2Q14181 598 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 PTF1AQ7RTS3 328 aa13.8□□□□□ -0.2
RTN3-203ENST00000341307 ELP1O95163 1332 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 PCDH11XQ9BZA7 1347 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 PCDH11YQ9BZA8 1340 aa13.79□□□□□ -0.2
RTN3-203ENST00000341307 MRC1P22897 1456 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms