RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 PROSER3Q2NL68 480 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 SYT10Q6XYQ8 523 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 CFAP53Q96M91 514 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 ISCA1Q9BUE6 129 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 GDPD2Q9HCC8 539 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 EXOC6BQ9Y2D4 811 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 NTSR2O95665 410 aa6.65□□□□□ -1.34
CSDE1-202ENST00000339438 TTC22Q5TAA0 569 aa6.65□□□□□ -1.34
CSDE1-202ENST00000339438 SLC16A10Q8TF71 515 aa6.65□□□□□ -1.34
CSDE1-202ENST00000339438 ARHGEF1Q92888 912 aaKnown RBP6.65□□□□□ -1.34
CSDE1-202ENST00000339438 RTFDC1Q9BY42 306 aaPredicted RBP6.65□□□□□ -1.34
CSDE1-202ENST00000339438 STRN4Q9NRL3 753 aa6.65□□□□□ -1.34
CSDE1-202ENST00000339438 GNAT3A8MTJ3 354 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 CCDC183Q5T5S1 534 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 C3orf67Q6ZVT6 689 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 NRBP1Q9UHY1 535 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 MYH2Q9UKX2 1941 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 USP27XA6NNY8 438 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 GUCY2CP25092 1073 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 PRKAR2BP31323 418 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 CRKLP46109 303 aaKnown RBP6.65□□□□□ -1.35
CSDE1-202ENST00000339438 ANKRD45Q5TZF3 282 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 ICE2Q659A1 982 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 EP400NLQ6ZTU2 488 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 PLA2G4DQ86XP0 818 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 REXO1L1PQ8IX06 675 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 LRRN4CLQ8ND94 238 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 C16orf45Q96MC5 204 aaPredicted RBP6.65□□□□□ -1.35
CSDE1-202ENST00000339438 CFAP44Q96MT7 982 aa6.65□□□□□ -1.35
CSDE1-202ENST00000339438 MYO1CO00159 1063 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 NCAPGQ9BPX3 1015 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 MTFR1LQ9H019 292 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 KCND1Q9NSA2 647 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 SMC4Q9NTJ3 1288 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 USP16Q9Y5T5 823 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 TPM3P06753 285 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 ST5P78524 1137 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 CHAF1AQ13111 956 aaPredicted RBP6.64□□□□□ -1.35
CSDE1-202ENST00000339438 CCDC93Q567U6 631 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 ZSCAN25Q6NSZ9 544 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 INTS4Q96HW7 963 aaKnown RBP6.64□□□□□ -1.35
CSDE1-202ENST00000339438 NOL10Q9BSC4 688 aaKnown RBP6.64□□□□□ -1.35
CSDE1-202ENST00000339438 TNNT1P13805 278 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 HOXA10P31260 410 aaPredicted RBP6.64□□□□□ -1.35
CSDE1-202ENST00000339438 SAMD1Q6SPF0 538 aaPredicted RBP6.64□□□□□ -1.35
CSDE1-202ENST00000339438 RASSF4Q9H2L5 321 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 MBIPQ9NS73 344 aa6.64□□□□□ -1.35
CSDE1-202ENST00000339438 PHF14O94880 888 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 IL6STP40189 918 aaPredicted RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 GSCP56915 257 aaPredicted RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 ELF2Q15723 593 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 FOXD4L5Q5VV16 416 aaPredicted RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 FOXD4L4Q8WXT5 416 aaPredicted RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 IFT57Q9NWB7 429 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 NARFQ9UHQ1 456 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 SPG7Q9UQ90 795 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 CLGNO14967 610 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 CASQ1P31415 396 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 CCDC144BQ3MJ40 725 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 CCDC144CPQ8IYA2 1237 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 NEK11Q8NG66 645 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 SYAP1Q96A49 352 aaPredicted RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 PLA2G12BQ9BX93 195 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 PGAP2Q9UHJ9 254 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 ERVV-1B6SEH8 477 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 VAMP4O75379 141 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 PNMA6AP0CW24 399 aaPredicted RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 AMPHP49418 695 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 KCNQ4P56696 695 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 PACS2Q86VP3 889 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 C16orf71Q8IYS4 520 aaPredicted RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 IQUBQ8NA54 791 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 SPC24Q8NBT2 197 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 CACTINQ8WUQ7 758 aaKnown RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 SMARCE1Q969G3 411 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 SRCIN1Q9C0H9 1055 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 TMX1Q9H3N1 280 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 L2HGDHQ9H9P8 463 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 ZC3H4Q9UPT8 1303 aaKnown RBP6.63□□□□□ -1.35
CSDE1-202ENST00000339438 PLXNA1Q9UIW2 1896 aa6.63□□□□□ -1.35
CSDE1-202ENST00000339438 TATP17735 454 aaPredicted RBP6.62□□□□□ -1.35
CSDE1-202ENST00000339438 BMS1Q14692 1282 aaKnown RBP6.62□□□□□ -1.35
CSDE1-202ENST00000339438 SRLQ86TD4 932 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 NLGN2Q8NFZ4 835 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 OTUD7AQ8TE49 926 aaPredicted RBP6.62□□□□□ -1.35
CSDE1-202ENST00000339438 ABCC4O15439 1325 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 SDSP20132 328 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 MPRIPQ6WCQ1 1025 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 TSPYL6Q8N831 410 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.62□□□□□ -1.35
CSDE1-202ENST00000339438 V9GYY5 206 aaPredicted RBP6.62□□□□□ -1.35
CSDE1-202ENST00000339438 EYSQ5T1H1 3165 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 ST18O60284 1047 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 IGKV5-2P06315 115 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 CLCN6P51797 869 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 MEX3CQ5U5Q3 659 aaKnown RBP6.62□□□□□ -1.35
CSDE1-202ENST00000339438 GIMAP6Q6P9H5 292 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 CCDC112Q8NEF3 446 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 ERO1AQ96HE7 468 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 C1orf115Q9H7X2 142 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms