RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CAMKK2Q96RR4 588 aa18.65■□□□□ 0.58
LIMS1-202ENST00000338045 CD2BP2O95400 341 aaKnown RBP18.64■□□□□ 0.57
LIMS1-202ENST00000338045 ST5P78524 1137 aa18.64■□□□□ 0.57
LIMS1-202ENST00000338045 ZNF589Q86UQ0 364 aaPredicted RBP18.64■□□□□ 0.57
LIMS1-202ENST00000338045 MAP4K1Q92918 833 aa18.64■□□□□ 0.57
LIMS1-202ENST00000338045 MCMDC2Q4G0Z9 681 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 ZMYM1Q5SVZ6 1142 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 KCNB2Q92953 911 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 HELLSQ9NRZ9 838 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 PNPLA7Q6ZV29 1317 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 CHGBP05060 677 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 LRRFIP1Q32MZ4 808 aaKnown RBP18.63■□□□□ 0.57
LIMS1-202ENST00000338045 PI16Q6UXB8 463 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 IL27Q8NEV9 243 aa18.63■□□□□ 0.57
LIMS1-202ENST00000338045 RNF113AO15541 343 aaKnown RBP18.62■□□□□ 0.57
LIMS1-202ENST00000338045 ZFYP08048 801 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-202ENST00000338045 GRAPQ13588 217 aa18.62■□□□□ 0.57
LIMS1-202ENST00000338045 NECTIN1Q15223 517 aa18.62■□□□□ 0.57
LIMS1-202ENST00000338045 GRAPLQ8TC17 118 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-202ENST00000338045 NRXN2Q9P2S2 1712 aa18.62■□□□□ 0.57
LIMS1-202ENST00000338045 KLRG2A4D1S0 409 aaPredicted RBP18.61■□□□□ 0.57
LIMS1-202ENST00000338045 TTF1Q15361 905 aaPredicted RBP18.61■□□□□ 0.57
LIMS1-202ENST00000338045 EZH2Q15910 746 aaKnown RBP18.61■□□□□ 0.57
LIMS1-202ENST00000338045 ANKRD2Q9GZV1 360 aa18.61■□□□□ 0.57
LIMS1-202ENST00000338045 ZNF804BA4D1E1 1349 aa18.61■□□□□ 0.57
LIMS1-202ENST00000338045 K7ELQ4 463 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-202ENST00000338045 CYP2E1P05181 493 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-202ENST00000338045 EN1Q05925 392 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-202ENST00000338045 SEC62Q99442 399 aaKnown RBP18.6■□□□□ 0.57
LIMS1-202ENST00000338045 HMG20BQ9P0W2 317 aa18.6■□□□□ 0.57
LIMS1-202ENST00000338045 SNX14Q9Y5W7 946 aa18.6■□□□□ 0.57
LIMS1-202ENST00000338045 ST18O60284 1047 aa18.6■□□□□ 0.57
LIMS1-202ENST00000338045 RASGRF1Q13972 1273 aa18.6■□□□□ 0.57
LIMS1-202ENST00000338045 RBM8AQ9Y5S9 174 aaKnown RBP18.6■□□□□ 0.57
LIMS1-202ENST00000338045 BCAMP50895 628 aa18.59■□□□□ 0.57
LIMS1-202ENST00000338045 RASEFQ8IZ41 740 aa18.59■□□□□ 0.57
LIMS1-202ENST00000338045 SPATA5Q8NB90 893 aa18.59■□□□□ 0.57
LIMS1-202ENST00000338045 ANO8Q9HCE9 1232 aaPredicted RBP18.59■□□□□ 0.57
LIMS1-202ENST00000338045 HOXA10P31260 410 aaPredicted RBP18.58■□□□□ 0.57
LIMS1-202ENST00000338045 SLC15A2Q16348 729 aa18.58■□□□□ 0.56
LIMS1-202ENST00000338045 SLFNL1Q499Z3 407 aa18.58■□□□□ 0.56
LIMS1-202ENST00000338045 RPGRQ92834 1020 aaKnown RBP18.58■□□□□ 0.56
LIMS1-202ENST00000338045 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.58■□□□□ 0.56
LIMS1-202ENST00000338045 PIH1D3Q9NQM4 214 aaKnown RBP18.58■□□□□ 0.56
LIMS1-202ENST00000338045 MAST3O60307 1309 aa18.58■□□□□ 0.56
LIMS1-202ENST00000338045 QSER1Q2KHR3 1735 aa18.57■□□□□ 0.56
LIMS1-202ENST00000338045 WTIPA6NIX2 430 aaPredicted RBP18.57■□□□□ 0.56
LIMS1-202ENST00000338045 NEK4P51957 841 aa18.57■□□□□ 0.56
LIMS1-202ENST00000338045 PRPF40BQ6NWY9 871 aaKnown RBP18.57■□□□□ 0.56
LIMS1-202ENST00000338045 CCDC129Q6ZRS4 1044 aa18.57■□□□□ 0.56
LIMS1-202ENST00000338045 APPBP2Q92624 585 aa18.57■□□□□ 0.56
LIMS1-202ENST00000338045 OSBP2Q969R2 916 aa18.57■□□□□ 0.56
LIMS1-202ENST00000338045 MYH7P12883 1935 aa18.57■□□□□ 0.56
LIMS1-202ENST00000338045 ZBTB22O15209 634 aa18.56■□□□□ 0.56
LIMS1-202ENST00000338045 CREB3L3Q68CJ9 461 aa18.56■□□□□ 0.56
LIMS1-202ENST00000338045 ZSCAN25Q6NSZ9 544 aa18.56■□□□□ 0.56
LIMS1-202ENST00000338045 ADD2P35612 726 aa18.56■□□□□ 0.56
LIMS1-202ENST00000338045 FBXO33Q7Z6M2 555 aa18.56■□□□□ 0.56
LIMS1-202ENST00000338045 RBM17Q96I25 401 aaKnown RBP18.56■□□□□ 0.56
LIMS1-202ENST00000338045 FAM84BQ96KN1 310 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-202ENST00000338045 DSCC1Q9BVC3 393 aa18.56■□□□□ 0.56
LIMS1-202ENST00000338045 BRIP1Q9BX63 1249 aa18.56■□□□□ 0.56
LIMS1-202ENST00000338045 IRS2Q9Y4H2 1338 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 SLC27A2O14975 620 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 GYG1P46976 350 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 KCNJ4P48050 445 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 MCM2P49736 904 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 UBE3CQ15386 1083 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 TSGA10IPQ3SY00 556 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 CAVIN4Q5BKX8 364 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 CRAMP1Q96RY5 1269 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 TM6SF1Q9BZW5 370 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 U3KPZ7 1027 aaPredicted RBP18.55■□□□□ 0.56
LIMS1-202ENST00000338045 ANKRD31Q8N7Z5 1873 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 DOCK2Q92608 1830 aa18.55■□□□□ 0.56
LIMS1-202ENST00000338045 MMP10P09238 476 aa18.54■□□□□ 0.56
LIMS1-202ENST00000338045 ZKSCAN1P17029 563 aaPredicted RBP18.54■□□□□ 0.56
LIMS1-202ENST00000338045 BAG6P46379 1132 aa18.54■□□□□ 0.56
LIMS1-202ENST00000338045 RNF20Q5VTR2 975 aa18.54■□□□□ 0.56
LIMS1-202ENST00000338045 GNL3LQ9NVN8 582 aaKnown RBP18.54■□□□□ 0.56
LIMS1-202ENST00000338045 STK32BQ9NY57 414 aa18.54■□□□□ 0.56
LIMS1-202ENST00000338045 M0R2C6 588 aa18.54■□□□□ 0.56
LIMS1-202ENST00000338045 BBOX1O75936 387 aa18.54■□□□□ 0.56
LIMS1-202ENST00000338045 SF3B2Q13435 895 aaKnown RBP18.53■□□□□ 0.56
LIMS1-202ENST00000338045 SLC9C2Q5TAH2 1124 aa18.53■□□□□ 0.56
LIMS1-202ENST00000338045 UPF3BQ9BZI7 483 aaKnown RBP18.53■□□□□ 0.56
LIMS1-202ENST00000338045 SLKQ9H2G2 1235 aaPredicted RBP18.53■□□□□ 0.56
LIMS1-202ENST00000338045 LEMD3Q9Y2U8 911 aa18.53■□□□□ 0.56
LIMS1-202ENST00000338045 PARP3Q9Y6F1 533 aa18.53■□□□□ 0.56
LIMS1-202ENST00000338045 MYO5AQ9Y4I1 1855 aaKnown RBP18.53■□□□□ 0.56
LIMS1-202ENST00000338045 RPAP1Q9BWH6 1393 aaPredicted RBP18.53■□□□□ 0.56
LIMS1-202ENST00000338045 TCRBV5S4A2TA0A5A2 114 aa18.52■□□□□ 0.56
LIMS1-202ENST00000338045 SEMA3EO15041 775 aa18.52■□□□□ 0.56
LIMS1-202ENST00000338045 IDH1O75874 414 aaKnown RBP18.52■□□□□ 0.56
LIMS1-202ENST00000338045 HSPD1P10809 573 aaKnown RBP18.52■□□□□ 0.56
LIMS1-202ENST00000338045 KLRK1P26718 216 aa18.52■□□□□ 0.56
LIMS1-202ENST00000338045 DDIT3P35638 169 aa18.52■□□□□ 0.56
LIMS1-202ENST00000338045 WASHC4Q2M389 1173 aa18.52■□□□□ 0.56
LIMS1-202ENST00000338045 TTC14Q96N46 770 aa18.52■□□□□ 0.56
LIMS1-202ENST00000338045 PUS7LQ9H0K6 701 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms