RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	TRMT1	Q9NXH9	659 aa	Known RBP	13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	KDR	P35968	1356 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	SOGA3	Q5TF21	947 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	DNAJC25	Q9H1X3	360 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	RTCB	Q9Y3I0	505 aa	Known RBP	13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	LMTK2	Q8IWU2	1503 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	CDC37L1	Q7L3B6	337 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	ERVV-2	B6SEH9	535 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	NLRP5	P59047	1200 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	PIGB	Q92521	554 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	INTS4	Q96HW7	963 aa	Known RBP	13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	TCEAL9	Q9UHQ7	104 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	CHGB	P05060	677 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	TPTE2	Q6XPS3	522 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	GAS2L3	Q86XJ1	694 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	CDK5RAP3	Q96JB5	506 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	CAMSAP1	Q5T5Y3	1602 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	ADAMTS13	Q76LX8	1427 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	PICALM	Q13492	652 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	CATIP	Q7Z7H3	387 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	TMEM63C	Q9P1W3	806 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	CCNL1	Q9UK58	526 aa	Predicted RBP	13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	TPCN1	Q9ULQ1	816 aa		13.74	□□□□□ -0.21
DDR1-223	ENST00000324771	ATP5J	P18859	108 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	TXLNA	P40222	546 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CTDSPL2	Q05D32	466 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	ANO6	Q4KMQ2	910 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	RNF41	Q9H4P4	317 aa	Predicted RBP	13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	LMBRD1	Q9NUN5	540 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CCDC87	Q9NVE4	849 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	NOL7	Q9UMY1	257 aa	Known RBP	13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CLTC	Q00610	1675 aa	Known RBP	13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	PDE8A	O60658	829 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CNNM3	Q8NE01	707 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	SMARCC1	Q92922	1105 aa	Predicted RBP	13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	PHKB	Q93100	1093 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	IPO7	O95373	1038 aa	Known RBP	13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CMTR1	Q8N1G2	835 aa	Known RBP	13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CPLX3	Q8WVH0	158 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	WDR17	Q8IZU2	1322 aa		13.73	□□□□□ -0.21
DDR1-223	ENST00000324771	CCDC196	A0A1B0GTZ2	297 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	PTPN12	Q05209	780 aa	Known RBP	13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	SEC31B	Q9NQW1	1179 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	PIK3C2B	O00750	1634 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771		A0A1B0GVL5	298 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	BCAM	P50895	628 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	TMX1	Q9H3N1	280 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	MCM9	Q9NXL9	1143 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	ADGRB1	O14514	1584 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	GYG1	P46976	350 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	NAP1L1	P55209	391 aa	Known RBP	13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	STAP2	Q9UGK3	403 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	ZNF532	Q9HCE3	1301 aa		13.72	□□□□□ -0.21
DDR1-223	ENST00000324771	TPM2	P07951	284 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	PTCH1	Q13635	1447 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	KIF24	Q5T7B8	1368 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	LSG1	Q9H089	658 aa	Known RBP	13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	DDX19A	Q9NUU7	478 aa	Known RBP	13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	PTPRU	Q92729	1446 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	PHKA1	P46020	1223 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	RTN1	Q16799	776 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	LUZP1	Q86V48	1076 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	WASF1	Q92558	559 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	CARD10	Q9BWT7	1032 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	MAGEB6P1	A0A0J9YX57	407 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	LARGE1	O95461	756 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	KRT18	P05783	430 aa	Known RBP	13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	HLF	Q16534	295 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	CCDC96	Q2M329	555 aa		13.71	□□□□□ -0.21
DDR1-223	ENST00000324771	AFM	P43652	599 aa		13.71	□□□□□ -0.22
DDR1-223	ENST00000324771	SPECC1	Q5M775	1068 aa		13.71	□□□□□ -0.22
DDR1-223	ENST00000324771	APPBP2	Q92624	585 aa		13.71	□□□□□ -0.22
DDR1-223	ENST00000324771	C16orf45	Q96MC5	204 aa	Predicted RBP	13.71	□□□□□ -0.22
DDR1-223	ENST00000324771	COPRS	Q9NQ92	184 aa		13.71	□□□□□ -0.22
DDR1-223	ENST00000324771	ANO10	Q9NW15	660 aa		13.71	□□□□□ -0.22
DDR1-223	ENST00000324771	CLIP2	Q9UDT6	1046 aa		13.71	□□□□□ -0.22
DDR1-223	ENST00000324771	ADGRL3	Q9HAR2	1447 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	SPATA31A3	Q5VYP0	1347 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	UQCRHL	A0A096LP55	91 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	UQCRH	P07919	91 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	SF3B2	Q13435	895 aa	Known RBP	13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	IFIT1B	Q5T764	474 aa	Known RBP	13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	MNS1	Q8NEH6	495 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	PI4K2B	Q8TCG2	481 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	OSBPL3	Q9H4L5	887 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	LOC102724428	A0A0B4J2F2	783 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	SIK1	P57059	783 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	CCDC43	Q96MW1	224 aa	Known RBP	13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	MYO3A	Q8NEV4	1616 aa		13.7	□□□□□ -0.22
DDR1-223	ENST00000324771	SETBP1	Q9Y6X0	1596 aa		13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	PUM3	Q15397	648 aa	Known RBP	13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	ESR2	Q92731	530 aa		13.69	□□□□□ -0.22
DDR1-223	ENST00000324771		E7EWF7	191 aa		13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	BRD1	O95696	1058 aa		13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	SAP30BP	Q9UHR5	308 aa	Known RBP	13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	RIMBP3C	A6NJZ7	1639 aa		13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	RIMBP3B	A6NNM3	1639 aa		13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	RIMBP3	Q9UFD9	1639 aa		13.69	□□□□□ -0.22
DDR1-223	ENST00000324771	HSPD1	P10809	573 aa	Known RBP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms