RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 BOLA2Q9H3K6 86 aa18.86■□□□□ 0.61
PDLIM5-202ENST00000318007 IFIT1P09914 478 aaKnown RBP18.86■□□□□ 0.61
PDLIM5-202ENST00000318007 FGFR2P21802 821 aa18.86■□□□□ 0.61
PDLIM5-202ENST00000318007 PI16Q6UXB8 463 aa18.86■□□□□ 0.61
PDLIM5-202ENST00000318007 MPNDQ8N594 471 aa18.86■□□□□ 0.61
PDLIM5-202ENST00000318007 SYT17Q9BSW7 474 aa18.86■□□□□ 0.61
PDLIM5-202ENST00000318007 GGA1Q9UJY5 639 aa18.86■□□□□ 0.61
PDLIM5-202ENST00000318007 SALL3Q9BXA9 1300 aa18.85■□□□□ 0.61
PDLIM5-202ENST00000318007 PHKA1P46020 1223 aa18.85■□□□□ 0.61
PDLIM5-202ENST00000318007 VPS37DQ86XT2 251 aa18.85■□□□□ 0.61
PDLIM5-202ENST00000318007 SNRKQ9NRH2 765 aa18.85■□□□□ 0.61
PDLIM5-202ENST00000318007 JAG2Q9Y219 1238 aa18.85■□□□□ 0.61
PDLIM5-202ENST00000318007 TTC39AQ5SRH9 613 aa18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 TBC1D16Q8TBP0 767 aa18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 EDC3Q96F86 508 aaKnown RBP18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 DNAJC2Q99543 621 aaKnown RBP18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 ECHDC1Q9NTX5 307 aa18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 LRRC37AA6NMS7 1700 aa18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 GSPT1P15170 499 aaKnown RBP18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 GPATCH3Q96I76 525 aa18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 GPR108Q9NPR9 543 aa18.84■□□□□ 0.61
PDLIM5-202ENST00000318007 TRIM6-TRIM34B2RNG4 842 aa18.83■□□□□ 0.61
PDLIM5-202ENST00000318007 SCARF1Q14162 830 aa18.83■□□□□ 0.61
PDLIM5-202ENST00000318007 CCDC102BQ68D86 513 aa18.83■□□□□ 0.61
PDLIM5-202ENST00000318007 PI4K2BQ8TCG2 481 aa18.83■□□□□ 0.61
PDLIM5-202ENST00000318007 C7orf43Q8WVR3 580 aa18.83■□□□□ 0.61
PDLIM5-202ENST00000318007 UBE4AQ14139 1066 aa18.82■□□□□ 0.6
PDLIM5-202ENST00000318007 CCDC158Q5M9N0 1113 aa18.82■□□□□ 0.6
PDLIM5-202ENST00000318007 TMC4Q7Z404 712 aa18.82■□□□□ 0.6
PDLIM5-202ENST00000318007 RILPL2Q969X0 211 aa18.82■□□□□ 0.6
PDLIM5-202ENST00000318007 BRCA1P38398 1863 aaKnown RBP18.82■□□□□ 0.6
PDLIM5-202ENST00000318007 DUOX1Q9NRD9 1551 aa18.82■□□□□ 0.6
PDLIM5-202ENST00000318007 FKBP4Q02790 459 aaKnown RBP eCLIP18.82■□□□□ 0.6
PDLIM5-202ENST00000318007 FRAT2O75474 233 aaPredicted RBP18.81■□□□□ 0.6
PDLIM5-202ENST00000318007 CAVIN4Q5BKX8 364 aa18.81■□□□□ 0.6
PDLIM5-202ENST00000318007 ATP2B4P23634 1241 aa18.81■□□□□ 0.6
PDLIM5-202ENST00000318007 DOK7Q18PE1 504 aa18.81■□□□□ 0.6
PDLIM5-202ENST00000318007 TTC22Q5TAA0 569 aa18.81■□□□□ 0.6
PDLIM5-202ENST00000318007 FAM84BQ96KN1 310 aaPredicted RBP18.81■□□□□ 0.6
PDLIM5-202ENST00000318007 LEMD3Q9Y2U8 911 aa18.81■□□□□ 0.6
PDLIM5-202ENST00000318007 CCDC93Q567U6 631 aa18.8■□□□□ 0.6
PDLIM5-202ENST00000318007 PODXL2Q9NZ53 605 aa18.8■□□□□ 0.6
PDLIM5-202ENST00000318007 LTBP1Q14766 1721 aa18.8■□□□□ 0.6
PDLIM5-202ENST00000318007 MCAMP43121 646 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 AOC3Q16853 763 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 WASHC4Q2M389 1173 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 ZNF277Q9NRM2 450 aaPredicted RBP18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 TTC41PQ6P2S7 1318 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 ERC2O15083 957 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 DBNDD1Q9H9R9 158 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 STAP2Q9UGK3 403 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 ARAP2Q8WZ64 1704 aa18.79■□□□□ 0.6
PDLIM5-202ENST00000318007 GOLIM4O00461 696 aa18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 GLRX3O76003 335 aaKnown RBP18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 HIBADHP31937 336 aaKnown RBP18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 RASSF7Q02833 373 aa18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 CHAF1AQ13111 956 aaPredicted RBP18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 RASGRF1Q13972 1273 aa18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 FBXW7Q969H0 707 aa18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 ZC3H12CQ9C0D7 883 aaKnown RBP18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 ANTXR1Q9H6X2 564 aa18.78■□□□□ 0.6
PDLIM5-202ENST00000318007 G3V3G9 751 aa18.77■□□□□ 0.6
PDLIM5-202ENST00000318007 ZAP70P43403 619 aa18.77■□□□□ 0.6
PDLIM5-202ENST00000318007 DCAF8Q5TAQ9 597 aa18.77■□□□□ 0.6
PDLIM5-202ENST00000318007 ATP5JP18859 108 aa18.77■□□□□ 0.59
PDLIM5-202ENST00000318007 SDSP20132 328 aa18.77■□□□□ 0.59
PDLIM5-202ENST00000318007 TBC1D9Q6ZT07 1266 aa18.77■□□□□ 0.59
PDLIM5-202ENST00000318007 OSBPL3Q9H4L5 887 aa18.77■□□□□ 0.59
PDLIM5-202ENST00000318007 IRS2Q9Y4H2 1338 aa18.76■□□□□ 0.59
PDLIM5-202ENST00000318007 CHGBP05060 677 aa18.76■□□□□ 0.59
PDLIM5-202ENST00000318007 PPIP5K2O43314 1243 aa18.75■□□□□ 0.59
PDLIM5-202ENST00000318007 ZNF804AQ7Z570 1209 aa18.75■□□□□ 0.59
PDLIM5-202ENST00000318007 COL1A1P02452 1464 aaPredicted RBP18.75■□□□□ 0.59
PDLIM5-202ENST00000318007 SNED1Q8TER0 1413 aa18.75■□□□□ 0.59
PDLIM5-202ENST00000318007 YBX3P16989 372 aaKnown RBP eCLIP18.75■□□□□ 0.591e-7■■□□□ 12.5
PDLIM5-202ENST00000318007 RTKN2Q8IZC4 609 aa18.75■□□□□ 0.59
PDLIM5-202ENST00000318007 HMG20BQ9P0W2 317 aa18.75■□□□□ 0.59
PDLIM5-202ENST00000318007 MED23Q9ULK4 1368 aa18.74■□□□□ 0.59
PDLIM5-202ENST00000318007 SLFNL1Q499Z3 407 aa18.74■□□□□ 0.59
PDLIM5-202ENST00000318007 ARHGAP27Q6ZUM4 889 aa18.74■□□□□ 0.59
PDLIM5-202ENST00000318007 FBXO33Q7Z6M2 555 aa18.74■□□□□ 0.59
PDLIM5-202ENST00000318007 SPATA5Q8NB90 893 aa18.74■□□□□ 0.59
PDLIM5-202ENST00000318007 KCNQ5Q9NR82 932 aa18.74■□□□□ 0.59
PDLIM5-202ENST00000318007 NFKBIEO00221 500 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 ARID4AP29374 1257 aaPredicted RBP18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 BMP2KLQ5H9B9 411 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 EYA3Q99504 573 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 HAUS7Q99871 368 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 TAOK3Q9H2K8 898 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 CD209Q9NNX6 404 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 GNL3LQ9NVN8 582 aaKnown RBP18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 PAG1Q9NWQ8 432 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 ABCF2Q9UG63 623 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 CC2D2BQ6DHV5 1058 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 FSD1Q9BTV5 496 aa18.73■□□□□ 0.59
PDLIM5-202ENST00000318007 AOX1Q06278 1338 aa18.72■□□□□ 0.59
PDLIM5-202ENST00000318007 CYP2E1P05181 493 aaPredicted RBP18.72■□□□□ 0.59
PDLIM5-202ENST00000318007 CNTROBQ8N137 903 aa18.72■□□□□ 0.59
PDLIM5-202ENST00000318007 LARGE2Q8N3Y3 721 aa18.72■□□□□ 0.59
PDLIM5-202ENST00000318007 UQCRFS1P1P0C7P4 283 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms