RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TTC41PQ6P2S7 1318 aa19.71■□□□□ 0.75
SYNPO-201ENST00000307662 VAV2P52735 878 aa19.71■□□□□ 0.75
SYNPO-201ENST00000307662 CCDC42Q96M95 316 aa19.71■□□□□ 0.74
SYNPO-201ENST00000307662 SCLT1Q96NL6 688 aa19.71■□□□□ 0.74
SYNPO-201ENST00000307662 DNAI2Q9GZS0 605 aa19.71■□□□□ 0.74
SYNPO-201ENST00000307662 CWC25Q9NXE8 425 aaPredicted RBP19.71■□□□□ 0.74
SYNPO-201ENST00000307662 PDE4BQ07343 736 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 PPP4R3AQ6IN85 833 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 KLHL34Q8N239 644 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 TMTC2Q8N394 836 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 CCDC77Q9BR77 488 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 PRPHP41219 470 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 CEP85Q6P2H3 762 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 RUFY3Q7L099 469 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 CPLX4Q7Z7G2 160 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 TBC1D5Q92609 795 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 BAG1Q99933 345 aaPredicted RBP19.7■□□□□ 0.74
SYNPO-201ENST00000307662 NUTM2BA6NNL0 878 aaPredicted RBP19.7■□□□□ 0.74
SYNPO-201ENST00000307662 NUTM2EB1AL46 878 aaPredicted RBP19.7■□□□□ 0.74
SYNPO-201ENST00000307662 RTN1Q16799 776 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 NUTM2AQ8IVF1 878 aaPredicted RBP19.7■□□□□ 0.74
SYNPO-201ENST00000307662 DHX58Q96C10 678 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 TSPY2A6NKD2 308 aa19.7■□□□□ 0.74
SYNPO-201ENST00000307662 SELENOSQ9BQE4 189 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 DNAJC21Q5F1R6 531 aaKnown RBP19.69■□□□□ 0.74
SYNPO-201ENST00000307662 CREB3L3Q68CJ9 461 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 C8orf58Q8NAV2 365 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 LMBR1Q8WVP7 490 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 PAIP2Q9BPZ3 127 aaKnown RBP19.69■□□□□ 0.74
SYNPO-201ENST00000307662 ATL3Q6DD88 541 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 LDHAL6AQ6ZMR3 332 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 PUS7Q96PZ0 661 aaKnown RBP19.69■□□□□ 0.74
SYNPO-201ENST00000307662 CHMLP26374 656 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 CNNM2Q9H8M5 875 aa19.69■□□□□ 0.74
SYNPO-201ENST00000307662 BRAPQ7Z569 592 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 CNGA4Q8IV77 575 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 PPP1R14CQ8TAE6 165 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 AFAP1L1Q8TED9 768 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 EHMT1Q9H9B1 1298 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 UBXN1Q04323 297 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 RSRC1Q96IZ7 334 aaKnown RBP19.68■□□□□ 0.74
SYNPO-201ENST00000307662 TTC21AQ8NDW8 1320 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 MYL5Q02045 173 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 TESK2Q96S53 571 aa19.68■□□□□ 0.74
SYNPO-201ENST00000307662 ATP5J2-PTCD1G3V325 749 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 SYCP3Q8IZU3 236 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 MMRN2Q9H8L6 949 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 PTPDC1A2A3K4 754 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 TMOD2Q9NZR1 351 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 UQCRFS1P1P0C7P4 283 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 ZBTB3Q9H5J0 574 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 KDM2BQ8NHM5 1336 aa19.67■□□□□ 0.74
SYNPO-201ENST00000307662 TRIM75PA6NK02 468 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 CFAP58Q5T655 872 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 SYCP2Q9BX26 1530 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 AKR1B15C9JRZ8 316 aaPredicted RBP19.66■□□□□ 0.74
SYNPO-201ENST00000307662 FAM160A1Q05DH4 1040 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 IFT81Q8WYA0 676 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 ZBTB9Q96C00 473 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 TBCAO75347 108 aaKnown RBP19.66■□□□□ 0.74
SYNPO-201ENST00000307662 TUBB2AQ13885 445 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 TUBB2BQ9BVA1 445 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 MXRA7P84157 204 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 B4GALNT4Q76KP1 1039 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 ALDH1L1O75891 902 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 KRT13P13646 458 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 ELF2Q15723 593 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 VAT1LQ9HCJ6 419 aa19.66■□□□□ 0.74
SYNPO-201ENST00000307662 ACTN2P35609 894 aa19.65■□□□□ 0.74
SYNPO-201ENST00000307662 CEBPAP49715 358 aaPredicted RBP19.65■□□□□ 0.74
SYNPO-201ENST00000307662 ASIC1P78348 528 aa19.65■□□□□ 0.74
SYNPO-201ENST00000307662 SAMD15Q9P1V8 674 aa19.65■□□□□ 0.74
SYNPO-201ENST00000307662 ZNF75DP51815 510 aa19.65■□□□□ 0.74
SYNPO-201ENST00000307662 STX17P56962 302 aa19.65■□□□□ 0.74
SYNPO-201ENST00000307662 IQCGQ9H095 443 aaKnown RBP19.65■□□□□ 0.74
SYNPO-201ENST00000307662 LUC7L2Q9Y383 392 aaKnown RBP19.65■□□□□ 0.74
SYNPO-201ENST00000307662 C17orf53Q8N3J3 647 aaPredicted RBP19.64■□□□□ 0.74
SYNPO-201ENST00000307662 FERMT2Q96AC1 680 aa19.64■□□□□ 0.74
SYNPO-201ENST00000307662 TSGA10Q9BZW7 698 aa19.64■□□□□ 0.74
SYNPO-201ENST00000307662 EIF2AK4Q9P2K8 1649 aaKnown RBP19.64■□□□□ 0.73
SYNPO-201ENST00000307662 BICDL2A1A5D9 508 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 FBLN1P23142 703 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 APOBRQ0VD83 1088 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 SLF2Q8IX21 1173 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 IFNL2Q8IZJ0 200 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 CHPF2Q9P2E5 772 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 RAD50Q92878 1312 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 TNNC1P63316 161 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 ANKIB1Q9P2G1 1089 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 A2MP01023 1474 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 ESR2Q92731 530 aa19.64■□□□□ 0.73
SYNPO-201ENST00000307662 PIK3C2GO75747 1445 aa19.63■□□□□ 0.73
SYNPO-201ENST00000307662 CLSTN2Q9H4D0 955 aa19.63■□□□□ 0.73
SYNPO-201ENST00000307662 ANXA1P04083 346 aa19.63■□□□□ 0.73
SYNPO-201ENST00000307662 IFIT1BQ5T764 474 aaKnown RBP19.63■□□□□ 0.73
SYNPO-201ENST00000307662 ELP1O95163 1332 aa19.63■□□□□ 0.73
SYNPO-201ENST00000307662 VAMP4O75379 141 aa19.63■□□□□ 0.73
SYNPO-201ENST00000307662 CCDC122Q5T0U0 273 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 CTTNBP2Q8WZ74 1663 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 CHMP4BP1P59074 171 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms