RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SLC5A1P13866 664 aa17.12■□□□□ 0.33
C9orf3-202ENST00000297979 HELLSQ9NRZ9 838 aa17.12■□□□□ 0.33
C9orf3-202ENST00000297979 ZKSCAN1P17029 563 aaPredicted RBP17.11■□□□□ 0.33
C9orf3-202ENST00000297979 LRRFIP1Q32MZ4 808 aaKnown RBP17.11■□□□□ 0.33
C9orf3-202ENST00000297979 CREB3L3Q68CJ9 461 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 TPTE2Q6XPS3 522 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 SEC62Q99442 399 aaKnown RBP17.11■□□□□ 0.33
C9orf3-202ENST00000297979 COL4A1P02462 1669 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 AKAP11Q9UKA4 1901 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 RNF113AO15541 343 aaKnown RBP17.11■□□□□ 0.33
C9orf3-202ENST00000297979 ZAP70P43403 619 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 ZMYM1Q5SVZ6 1142 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 RNF20Q5VTR2 975 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 ANKRD18AQ8IVF6 992 aa17.11■□□□□ 0.33
C9orf3-202ENST00000297979 NAP1L2Q9ULW6 460 aaPredicted RBP17.11■□□□□ 0.33
C9orf3-202ENST00000297979 IGSF3O75054 1194 aa17.1■□□□□ 0.33
C9orf3-202ENST00000297979 SSFA2P28290 1259 aa17.1■□□□□ 0.33
C9orf3-202ENST00000297979 MCAMP43121 646 aa17.1■□□□□ 0.33
C9orf3-202ENST00000297979 CCDC102BQ68D86 513 aa17.1■□□□□ 0.33
C9orf3-202ENST00000297979 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.1■□□□□ 0.33
C9orf3-202ENST00000297979 UQCRFS1P1P0C7P4 283 aa17.1■□□□□ 0.33
C9orf3-202ENST00000297979 ARID4AP29374 1257 aaPredicted RBP17.1■□□□□ 0.33
C9orf3-202ENST00000297979 CCDC129Q6ZRS4 1044 aa17.1■□□□□ 0.33
C9orf3-202ENST00000297979 CARMIL3Q8ND23 1372 aa17.1■□□□□ 0.33
C9orf3-202ENST00000297979 SLC27A2O14975 620 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 FRAT2O75474 233 aaPredicted RBP17.09■□□□□ 0.33
C9orf3-202ENST00000297979 CHRNDQ07001 517 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 TMX3Q96JJ7 454 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 NLRP3Q96P20 1036 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 TM6SF1Q9BZW5 370 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 A0A1B0GUL6 1792 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 ZFYP08048 801 aaPredicted RBP17.09■□□□□ 0.33
C9orf3-202ENST00000297979 PHKA1P46020 1223 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 PI16Q6UXB8 463 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 JAKMIP1Q96N16 626 aaKnown RBP17.09■□□□□ 0.33
C9orf3-202ENST00000297979 HMG20BQ9P0W2 317 aa17.09■□□□□ 0.33
C9orf3-202ENST00000297979 MYH7P12883 1935 aa17.08■□□□□ 0.33
C9orf3-202ENST00000297979 CASTP20810 708 aaKnown RBP17.08■□□□□ 0.33
C9orf3-202ENST00000297979 HMGB2P26583 209 aaKnown RBP17.08■□□□□ 0.32
C9orf3-202ENST00000297979 TTC14Q96N46 770 aa17.08■□□□□ 0.32
C9orf3-202ENST00000297979 U3KPZ7 1027 aaPredicted RBP17.08■□□□□ 0.32
C9orf3-202ENST00000297979 TTF1Q15361 905 aaPredicted RBP17.07■□□□□ 0.32
C9orf3-202ENST00000297979 ADCK5Q3MIX3 580 aa17.07■□□□□ 0.32
C9orf3-202ENST00000297979 SLFNL1Q499Z3 407 aa17.07■□□□□ 0.32
C9orf3-202ENST00000297979 BSDC1Q9NW68 430 aaPredicted RBP17.07■□□□□ 0.32
C9orf3-202ENST00000297979 TAF1P21675 1872 aa17.07■□□□□ 0.32
C9orf3-202ENST00000297979 MAST3O60307 1309 aa17.07■□□□□ 0.32
C9orf3-202ENST00000297979 RPAP1Q9BWH6 1393 aaPredicted RBP17.07■□□□□ 0.32
C9orf3-202ENST00000297979 NFIXQ14938 502 aa17.07■□□□□ 0.32
C9orf3-202ENST00000297979 NPHP1O15259 732 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 TXNRD1Q16881 649 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 NOL8Q76FK4 1167 aaKnown RBP17.06■□□□□ 0.32
C9orf3-202ENST00000297979 CWC22Q9HCG8 908 aaKnown RBP17.06■□□□□ 0.32
C9orf3-202ENST00000297979 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 EP400Q96L91 3159 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 SNAP23O00161 211 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.06■□□□□ 0.32
C9orf3-202ENST00000297979 BCCIPQ9P287 314 aaKnown RBP eCLIP17.06■□□□□ 0.32
C9orf3-202ENST00000297979 CYP46A1Q9Y6A2 500 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 TNRC6CQ9HCJ0 1690 aaKnown RBP17.06■□□□□ 0.32
C9orf3-202ENST00000297979 PSMA5P28066 241 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 CUL4AQ13619 759 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 DSCC1Q9BVC3 393 aa17.06■□□□□ 0.32
C9orf3-202ENST00000297979 CYP2E1P05181 493 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-202ENST00000297979 RAB3GAP1Q15042 981 aa17.05■□□□□ 0.32
C9orf3-202ENST00000297979 TSGA10IPQ3SY00 556 aa17.05■□□□□ 0.32
C9orf3-202ENST00000297979 CELF1Q92879 486 aaKnown RBP17.05■□□□□ 0.32
C9orf3-202ENST00000297979 RXRBP28702 533 aa17.05■□□□□ 0.32
C9orf3-202ENST00000297979 RUFY3Q7L099 469 aa17.05■□□□□ 0.32
C9orf3-202ENST00000297979 CCDC24Q8N4L8 307 aa17.05■□□□□ 0.32
C9orf3-202ENST00000297979 M0R2C6 588 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 CPA1P15085 419 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 AK2P54819 239 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 VPS53Q5VIR6 699 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 ZSCAN25Q6NSZ9 544 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 PROM2Q8N271 834 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 ZGPATQ8N5A5 531 aaKnown RBP17.04■□□□□ 0.32
C9orf3-202ENST00000297979 CNBD1Q8NA66 436 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 APPBP2Q92624 585 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 OSBP2Q969R2 916 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 GYS1P13807 737 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 KRT32Q14532 448 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 WASHC4Q2M389 1173 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 PDRG1Q9NUG6 133 aa17.04■□□□□ 0.32
C9orf3-202ENST00000297979 RPS8P62241 208 aaKnown RBP17.03■□□□□ 0.32
C9orf3-202ENST00000297979 SPATA5Q8NB90 893 aa17.03■□□□□ 0.32
C9orf3-202ENST00000297979 PIH1D3Q9NQM4 214 aaKnown RBP17.03■□□□□ 0.32
C9orf3-202ENST00000297979 MINPP1Q9UNW1 487 aa17.03■□□□□ 0.32
C9orf3-202ENST00000297979 RASGRF1Q13972 1273 aa17.03■□□□□ 0.32
C9orf3-202ENST00000297979 INTS4Q96HW7 963 aaKnown RBP17.03■□□□□ 0.32
C9orf3-202ENST00000297979 PLSCR1O15162 318 aa17.02■□□□□ 0.32
C9orf3-202ENST00000297979 HSPD1P10809 573 aaKnown RBP17.02■□□□□ 0.32
C9orf3-202ENST00000297979 UBE4AQ14139 1066 aa17.02■□□□□ 0.32
C9orf3-202ENST00000297979 DOCK2Q92608 1830 aa17.02■□□□□ 0.32
C9orf3-202ENST00000297979 ADD2P35612 726 aa17.02■□□□□ 0.32
C9orf3-202ENST00000297979 LIMCH1Q9UPQ0 1083 aa17.02■□□□□ 0.32
C9orf3-202ENST00000297979 TAF6LQ9Y6J9 622 aa17.02■□□□□ 0.32
C9orf3-202ENST00000297979 MYO5AQ9Y4I1 1855 aaKnown RBP17.02■□□□□ 0.31
C9orf3-202ENST00000297979 BCAMP50895 628 aa17.02■□□□□ 0.31
C9orf3-202ENST00000297979 BLOC1S2Q6QNY1 142 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms