RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 RPS6KA3P51812 740 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 PPP2R3AQ06190 1150 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 HSP90B2PQ58FF3 399 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 C11orf57Q6ZUT1 292 aaPredicted RBP10.63□□□□□ -0.71
PDGFC-201ENST00000274071 KIRREL3Q8IZU9 778 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 PARD3BQ8TEW8 1205 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 CCDC102AQ96A19 550 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 A2ML1A8K2U0 1454 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 TMCO5BA8MYB1 307 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 FNTAP49354 379 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 ICA1Q05084 483 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 ALDH1L2Q3SY69 923 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 ANKRD23Q86SG2 305 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 ANKRD18AQ8IVF6 992 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 LARP6Q9BRS8 491 aaKnown RBP10.63□□□□□ -0.71
PDGFC-201ENST00000274071 ACBD3Q9H3P7 528 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 DDX19AQ9NUU7 478 aaKnown RBP10.63□□□□□ -0.71
PDGFC-201ENST00000274071 ALKQ9UM73 1620 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 IBSPP21815 317 aaPredicted RBP10.62□□□□□ -0.71
PDGFC-201ENST00000274071 GCKP35557 465 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 XAGE2Q96GT9 111 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 SMC3Q9UQE7 1217 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 MINK1Q8N4C8 1332 aaPredicted RBP10.62□□□□□ -0.71
PDGFC-201ENST00000274071 NR1I2O75469 434 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 FAM163BP0C2L3 166 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 TRIM74Q86UV6 250 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 TRIM73Q86UV7 250 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 IMPACTQ9P2X3 320 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 PTPRMP28827 1452 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 A0A1B0GUA9 196 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 GOLGA1Q92805 767 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 IL17RAQ96F46 866 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 ESYT1Q9BSJ8 1104 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 TRIM35Q9UPQ4 493 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 MRFAP1Q9Y605 127 aa10.62□□□□□ -0.71
PDGFC-201ENST00000274071 BECN2A8MW95 431 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 SNUPNO95149 360 aaKnown RBP10.61□□□□□ -0.71
PDGFC-201ENST00000274071 SFPQP23246 707 aaKnown RBP eCLIP10.61□□□□□ -0.71
PDGFC-201ENST00000274071 USP5P45974 858 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 CLNS1AP54105 237 aaKnown RBP10.61□□□□□ -0.71
PDGFC-201ENST00000274071 RBBP5Q15291 538 aaKnown RBP10.61□□□□□ -0.71
PDGFC-201ENST00000274071 UTP14AQ9BVJ6 771 aaKnown RBP10.61□□□□□ -0.71
PDGFC-201ENST00000274071 ABCB6Q9NP58 842 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 ANO2Q9NQ90 1003 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 RIMS2Q9UQ26 1411 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 APBB1O00213 710 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 KRT85P78386 507 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 SLC5A9Q2M3M2 681 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 FAM173BQ6P4H8 233 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 NUTM1Q86Y26 1132 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 DHX40Q8IX18 779 aaKnown RBP10.61□□□□□ -0.71
PDGFC-201ENST00000274071 FAM177A1Q8N128 213 aaPredicted RBP10.61□□□□□ -0.71
PDGFC-201ENST00000274071 ANKZF1Q9H8Y5 726 aa10.61□□□□□ -0.71
PDGFC-201ENST00000274071 PECAM1P16284 738 aaPredicted RBP10.6□□□□□ -0.71
PDGFC-201ENST00000274071 CASP8Q14790 479 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 CCDC150Q8NCX0 1101 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 GOLGA6L4A6NEF3 574 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 GJB2P29033 226 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 AMOTL1Q8IY63 956 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 AFAP1L1Q8TED9 768 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 ZBTB10Q96DT7 871 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 MPHOSPH8Q99549 860 aa10.6□□□□□ -0.71
PDGFC-201ENST00000274071 VPS37CA5D8V6 355 aaPredicted RBP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 CCP110O43303 1012 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 RNF40O75150 1001 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 U2AF1L5P0DN76 240 aaPredicted RBP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 U2AF1Q01081 240 aaKnown RBP eCLIP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 DNAJC14Q6Y2X3 702 aaPredicted RBP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 WDR24Q96S15 920 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 PNKPQ96T60 521 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 ZSWIM4Q9H7M6 989 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 DDX20Q9UHI6 824 aaKnown RBP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 RAB21Q9UL25 225 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 PIK3R4Q99570 1358 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 PEX19P40855 299 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 MTHFSP49914 203 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 ACTN3Q08043 901 aaPredicted RBP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 PSME1Q06323 249 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 CCDC96Q2M329 555 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 RUFY3Q7L099 469 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 TMC6Q7Z403 805 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 DRAXINQ8NBI3 349 aaPredicted RBP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 BICD2Q8TD16 824 aa10.59□□□□□ -0.71
PDGFC-201ENST00000274071 THUMPD2Q9BTF0 503 aaKnown RBP10.59□□□□□ -0.71
PDGFC-201ENST00000274071 SHOX2O60902 331 aaPredicted RBP10.58□□□□□ -0.72
PDGFC-201ENST00000274071 PRPF6O94906 941 aaKnown RBP10.58□□□□□ -0.72
PDGFC-201ENST00000274071 SYF2O95926 243 aaKnown RBP10.58□□□□□ -0.72
PDGFC-201ENST00000274071 ARHGAP45Q92619 1136 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 KLC4Q9NSK0 619 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 LIMCH1Q9UPQ0 1083 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 NPHP3Q7Z494 1330 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 TTC21AQ8NDW8 1320 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 A0A087WWV3 80 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 VWA3AA6NCI4 1184 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 LRRIQ3A6PVS8 624 aaPredicted RBP10.58□□□□□ -0.72
PDGFC-201ENST00000274071 NRDCO43847 1150 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 FSBPO95073 299 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 PDE6BP35913 854 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 AK2P54819 239 aa10.58□□□□□ -0.72
PDGFC-201ENST00000274071 NAA25Q14CX7 972 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms