RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 PLXNC1O60486 1568 aa9.02□□□□□ -0.96
LIMD1-201ENST00000273317 PPP1R2P41236 205 aa9.02□□□□□ -0.96
LIMD1-201ENST00000273317 ERCC6LQ2NKX8 1250 aa9.02□□□□□ -0.96
LIMD1-201ENST00000273317 CCDC152Q4G0S7 254 aa9.02□□□□□ -0.96
LIMD1-201ENST00000273317 OTUD6BQ8N6M0 293 aa9.02□□□□□ -0.96
LIMD1-201ENST00000273317 MAP3K9P80192 1104 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 MRPS9P82933 396 aaKnown RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 SOS1Q07889 1333 aaPredicted RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 MCM6Q14566 821 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 CROCCP2Q86T23 111 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 POTEDQ86YR6 584 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 ATRIPQ8WXE1 791 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 FAM184BQ9ULE4 1060 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 PLCG2P16885 1265 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 THUMPD2Q9BTF0 503 aaKnown RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 ZWINTO95229 277 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 WASLO00401 505 aaPredicted RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 IFIT1BQ5T764 474 aaKnown RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 AOPEPQ8N6M6 819 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC8Q9H0W5 538 aaPredicted RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 CSRNP2Q9H175 543 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 SAMM50Q9Y512 469 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 ZMYM4Q5VZL5 1548 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 TRIM75PA6NK02 468 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 VGLL3A8MV65 326 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 VWA3BQ502W6 1294 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 GSTA5Q7RTV2 222 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 PAIP2Q9BPZ3 127 aaKnown RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 ALG1Q9BT22 464 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 PHF23Q9BUL5 403 aaPredicted RBP9.02□□□□□ -0.97
LIMD1-201ENST00000273317 MBIPQ9NS73 344 aa9.02□□□□□ -0.97
LIMD1-201ENST00000273317 HMGB1P1B2RPK0 211 aaPredicted RBP9.01□□□□□ -0.97
LIMD1-201ENST00000273317 ELP1O95163 1332 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 KIF1BO60333 1816 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 NOS1P29475 1434 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 KLF18A0A0U1RQI7 1052 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 KRT2P35908 639 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 GIMAP6Q6P9H5 292 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 GPR161Q8N6U8 529 aaKnown RBP9.01□□□□□ -0.97
LIMD1-201ENST00000273317 PPP1R1BQ9UD71 204 aaPredicted RBP9.01□□□□□ -0.97
LIMD1-201ENST00000273317 NPHP3Q7Z494 1330 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 GCC2Q8IWJ2 1684 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 GBP1P32455 592 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 ESYT1Q9BSJ8 1104 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 STK24Q9Y6E0 443 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 AOX1Q06278 1338 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 SPTLC2O15270 562 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 RAB3GAP1Q15042 981 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 MCMDC2Q4G0Z9 681 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 NKIRAS1Q9NYS0 192 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 UBXN1Q04323 297 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 SEL1L2Q5TEA6 688 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC42Q96M95 316 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 UGGT2Q9NYU1 1516 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 SMC5Q8IY18 1101 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC114Q96M63 670 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 MTUS1Q9ULD2 1270 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 MAST1Q9Y2H9 1570 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 GMNNO75496 209 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 ATP11AP98196 1134 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 TFIP11Q9UBB9 837 aaKnown RBP9.01□□□□□ -0.97
LIMD1-201ENST00000273317 TSPY3P0CV98 308 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 TSPY8P0CW00 308 aa9.01□□□□□ -0.97
LIMD1-201ENST00000273317 CPLX4Q7Z7G2 160 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 TRIM7Q9C029 511 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 C6orf50Q9HD87 102 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 RBM28Q9NW13 759 aaKnown RBP9□□□□□ -0.97
LIMD1-201ENST00000273317 MRVI1Q9Y6F6 885 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 GRIN2AQ12879 1464 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 FYB2Q5VWT5 728 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 SETSIPP0DME0 302 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 ST5P78524 1137 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 SELENOSQ9BQE4 189 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9□□□□□ -0.97
LIMD1-201ENST00000273317 DNAJC21Q5F1R6 531 aaKnown RBP9□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC26Q8TAB7 109 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 DISP3Q9P2K9 1392 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 SNRPA1P09661 255 aaKnown RBP9□□□□□ -0.97
LIMD1-201ENST00000273317 SDSP20132 328 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 GBP6Q6ZN66 633 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 STMN2Q93045 179 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 ZSWIM4Q9H7M6 989 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 A0A1B0GUL7 405 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 PHACTR2O75167 634 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 CFAP157Q5JU67 520 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 IRX3P78415 501 aaPredicted RBP9□□□□□ -0.97
LIMD1-201ENST00000273317 UBE3BQ7Z3V4 1068 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 GDPD2Q9HCC8 539 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 GIGYF1O75420 1035 aaPredicted RBP9□□□□□ -0.97
LIMD1-201ENST00000273317 AFAP1L1Q8TED9 768 aa9□□□□□ -0.97
LIMD1-201ENST00000273317 CPSF2Q9P2I0 782 aaKnown RBP9□□□□□ -0.97
LIMD1-201ENST00000273317 GAS8O95995 478 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 TMEM87AQ8NBN3 555 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 ABCC1P33527 1531 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 IQCDQ96DY2 449 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 ODF2LQ9ULJ1 636 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 CD109Q6YHK3 1445 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC160A6NGH7 325 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 ZNF804AQ7Z570 1209 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 NUTM2AQ8IVF1 878 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms