RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KIAA1211Q6ZU35 1233 aa17.04■□□□□ 0.32
SS18-201ENST00000269137 ILDR1Q86SU0 546 aaPredicted RBP17.04■□□□□ 0.32
SS18-201ENST00000269137 FAM227BQ96M60 508 aa17.04■□□□□ 0.32
SS18-201ENST00000269137 LSG1Q9H089 658 aaKnown RBP17.04■□□□□ 0.32
SS18-201ENST00000269137 MCCP23508 829 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 ZAP70P43403 619 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 LRRFIP1Q32MZ4 808 aaKnown RBP17.03■□□□□ 0.32
SS18-201ENST00000269137 CRAMP1Q96RY5 1269 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 ANKRD31Q8N7Z5 1873 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 A0A0D9SFI3 127 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 BBOX1O75936 387 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 IL17RAQ96F46 866 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 ANTXR1Q9H6X2 564 aa17.03■□□□□ 0.32
SS18-201ENST00000269137 MED23Q9ULK4 1368 aa17.02■□□□□ 0.32
SS18-201ENST00000269137 ZNF804BA4D1E1 1349 aa17.02■□□□□ 0.32
SS18-201ENST00000269137 ANAPC15P60006 121 aa17.02■□□□□ 0.31
SS18-201ENST00000269137 BECN1Q14457 450 aa17.02■□□□□ 0.31
SS18-201ENST00000269137 TTF1Q15361 905 aaPredicted RBP17.02■□□□□ 0.31
SS18-201ENST00000269137 ZFYP08048 801 aaPredicted RBP17.01■□□□□ 0.31
SS18-201ENST00000269137 RNF113AO15541 343 aaKnown RBP17■□□□□ 0.31
SS18-201ENST00000269137 HSPA4P34932 840 aa17■□□□□ 0.31
SS18-201ENST00000269137 PDE6BP35913 854 aa17■□□□□ 0.31
SS18-201ENST00000269137 BCAMP50895 628 aa17■□□□□ 0.31
SS18-201ENST00000269137 RABEP1Q15276 862 aa17■□□□□ 0.31
SS18-201ENST00000269137 MSL1Q68DK7 614 aa17■□□□□ 0.31
SS18-201ENST00000269137 PI16Q6UXB8 463 aa17■□□□□ 0.31
SS18-201ENST00000269137 TMC4Q7Z404 712 aa17■□□□□ 0.31
SS18-201ENST00000269137 SPATA5Q8NB90 893 aa17■□□□□ 0.31
SS18-201ENST00000269137 HELLSQ9NRZ9 838 aa17■□□□□ 0.31
SS18-201ENST00000269137 HMG20BQ9P0W2 317 aa17■□□□□ 0.31
SS18-201ENST00000269137 ZBTB22O15209 634 aa17■□□□□ 0.31
SS18-201ENST00000269137 CYP2E1P05181 493 aaPredicted RBP17■□□□□ 0.31
SS18-201ENST00000269137 RASGRF1Q13972 1273 aa17■□□□□ 0.31
SS18-201ENST00000269137 MCMDC2Q4G0Z9 681 aa17■□□□□ 0.31
SS18-201ENST00000269137 ZMYM1Q5SVZ6 1142 aa17■□□□□ 0.31
SS18-201ENST00000269137 SNX21Q969T3 373 aa17■□□□□ 0.31
SS18-201ENST00000269137 GNL3LQ9NVN8 582 aaKnown RBP17■□□□□ 0.31
SS18-201ENST00000269137 LEMD3Q9Y2U8 911 aa17■□□□□ 0.31
SS18-201ENST00000269137 CCDC171Q6TFL3 1326 aa16.99■□□□□ 0.31
SS18-201ENST00000269137 SRGNP10124 158 aa16.99■□□□□ 0.31
SS18-201ENST00000269137 KCNJ4P48050 445 aa16.99■□□□□ 0.31
SS18-201ENST00000269137 CAVIN4Q5BKX8 364 aa16.99■□□□□ 0.31
SS18-201ENST00000269137 FBXO33Q7Z6M2 555 aa16.99■□□□□ 0.31
SS18-201ENST00000269137 DAXXQ9UER7 740 aaPredicted RBP16.99■□□□□ 0.31
SS18-201ENST00000269137 XDHP47989 1333 aa16.99■□□□□ 0.31
SS18-201ENST00000269137 NPR1P16066 1061 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 PTH1RQ03431 593 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 MAP4K1Q92918 833 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 FAM84BQ96KN1 310 aaPredicted RBP16.98■□□□□ 0.31
SS18-201ENST00000269137 TBC1D2Q9BYX2 928 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.98■□□□□ 0.31
SS18-201ENST00000269137 MYH7P12883 1935 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 WTIPA6NIX2 430 aaPredicted RBP16.98■□□□□ 0.31
SS18-201ENST00000269137 ZSCAN25Q6NSZ9 544 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 ERICH6Q7L0X2 663 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 ZNF589Q86UQ0 364 aaPredicted RBP16.98■□□□□ 0.31
SS18-201ENST00000269137 SLC16A10Q8TF71 515 aa16.98■□□□□ 0.31
SS18-201ENST00000269137 IRS2Q9Y4H2 1338 aa16.97■□□□□ 0.31
SS18-201ENST00000269137 SEMA3EO15041 775 aa16.97■□□□□ 0.31
SS18-201ENST00000269137 CHGBP05060 677 aa16.97■□□□□ 0.31
SS18-201ENST00000269137 GYG1P46976 350 aa16.97■□□□□ 0.31
SS18-201ENST00000269137 IL27Q8NEV9 243 aa16.97■□□□□ 0.31
SS18-201ENST00000269137 KCNB2Q92953 911 aa16.97■□□□□ 0.31
SS18-201ENST00000269137 PIH1D3Q9NQM4 214 aaKnown RBP16.97■□□□□ 0.31
SS18-201ENST00000269137 ANKIB1Q9P2G1 1089 aa16.97■□□□□ 0.31
SS18-201ENST00000269137 C15orf52Q6ZUT6 534 aaKnown RBP16.96■□□□□ 0.31
SS18-201ENST00000269137 PALD1Q9ULE6 856 aa16.96■□□□□ 0.31
SS18-201ENST00000269137 ALDH1B1P30837 517 aa16.96■□□□□ 0.3
SS18-201ENST00000269137 VPS37DQ86XT2 251 aa16.96■□□□□ 0.3
SS18-201ENST00000269137 MASTLQ96GX5 879 aa16.96■□□□□ 0.3
SS18-201ENST00000269137 SEC62Q99442 399 aaKnown RBP16.96■□□□□ 0.3
SS18-201ENST00000269137 PODXL2Q9NZ53 605 aa16.96■□□□□ 0.3
SS18-201ENST00000269137 PDS5AQ29RF7 1337 aaKnown RBP16.95■□□□□ 0.3
SS18-201ENST00000269137 HIBADHP31937 336 aaKnown RBP16.95■□□□□ 0.3
SS18-201ENST00000269137 ADD2P35612 726 aa16.95■□□□□ 0.3
SS18-201ENST00000269137 NECTIN1Q15223 517 aa16.95■□□□□ 0.3
SS18-201ENST00000269137 UBE3CQ15386 1083 aa16.95■□□□□ 0.3
SS18-201ENST00000269137 SP8Q8IXZ3 490 aa16.95■□□□□ 0.3
SS18-201ENST00000269137 APPBP2Q92624 585 aa16.95■□□□□ 0.3
SS18-201ENST00000269137 DENND2AQ9ULE3 1009 aa16.95■□□□□ 0.3
SS18-201ENST00000269137 LRRC37AA6NMS7 1700 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 ATP2B4P23634 1241 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 KLRK1P26718 216 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 SLC4A3P48751 1232 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 GPSM2P81274 684 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 OSBP2Q969R2 916 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 RBM8AQ9Y5S9 174 aaKnown RBP16.94■□□□□ 0.3
SS18-201ENST00000269137 DOCK2Q92608 1830 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 MAST3O60307 1309 aa16.94■□□□□ 0.3
SS18-201ENST00000269137 MYO5AQ9Y4I1 1855 aaKnown RBP16.94■□□□□ 0.3
SS18-201ENST00000269137 PPEF1O14829 653 aaPredicted RBP16.93■□□□□ 0.3
SS18-201ENST00000269137 MAP3K12Q12852 859 aa16.93■□□□□ 0.3
SS18-201ENST00000269137 SLFNL1Q499Z3 407 aa16.93■□□□□ 0.3
SS18-201ENST00000269137 HSCBQ8IWL3 235 aa16.93■□□□□ 0.3
SS18-201ENST00000269137 PDGFDQ9GZP0 370 aaPredicted RBP16.93■□□□□ 0.3
SS18-201ENST00000269137 ATP6V0A2Q9Y487 856 aa16.93■□□□□ 0.3
SS18-201ENST00000269137 COL11A2P13942 1736 aaPredicted RBP16.93■□□□□ 0.3
SS18-201ENST00000269137 IDH1O75874 414 aaKnown RBP16.93■□□□□ 0.3
SS18-201ENST00000269137 SLC9C2Q5TAH2 1124 aa16.93■□□□□ 0.3
SS18-201ENST00000269137 STYK1Q6J9G0 422 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms