RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 SYNE4Q8N205 404 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 HAUS7Q99871 368 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 DENND2AQ9ULE3 1009 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 HEG1Q9ULI3 1381 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 NBPF26B4DH59 902 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 M0R2C6 588 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 HSPD1P10809 573 aaKnown RBP10.71□□□□□ -0.69
MSH4-201ENST00000263187 ADORA1P30542 326 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 NBPF14Q5TI25 921 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 NBPF10Q6P3W6 841 aaKnown RBP10.71□□□□□ -0.69
MSH4-201ENST00000263187 CCDC73Q6ZRK6 1079 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 DHX32Q7L7V1 743 aaKnown RBP10.71□□□□□ -0.69
MSH4-201ENST00000263187 NBPF15Q8N660 670 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 AOPEPQ8N6M6 819 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 KBTBD3Q8NAB2 608 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 KINO60870 393 aaKnown RBP10.71□□□□□ -0.7
MSH4-201ENST00000263187 SF3A1Q15459 793 aaKnown RBP10.71□□□□□ -0.7
MSH4-201ENST00000263187 CFAP45Q9UL16 551 aa10.71□□□□□ -0.7
MSH4-201ENST00000263187 KDM6AO15550 1401 aaPredicted RBP10.7□□□□□ -0.7
MSH4-201ENST00000263187 ROBO1Q9Y6N7 1651 aa10.7□□□□□ -0.7
MSH4-201ENST00000263187 TRPM3Q9HCF6 1732 aaPredicted RBP10.7□□□□□ -0.7
MSH4-201ENST00000263187 A0A1B0GUL7 405 aa10.7□□□□□ -0.7
MSH4-201ENST00000263187 ADD1P35611 737 aaKnown RBP10.7□□□□□ -0.7
MSH4-201ENST00000263187 HSP90AA4PQ58FG1 418 aa10.7□□□□□ -0.7
MSH4-201ENST00000263187 USPL1Q5W0Q7 1092 aa10.7□□□□□ -0.7
MSH4-201ENST00000263187 ATG9AQ7Z3C6 839 aa10.7□□□□□ -0.7
MSH4-201ENST00000263187 PLA2G4DQ86XP0 818 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 OSBP2Q969R2 916 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 CLIC4Q9Y696 253 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 MARCKSP29966 332 aaPredicted RBP10.69□□□□□ -0.7
MSH4-201ENST00000263187 PDIA3P30101 505 aaKnown RBP10.69□□□□□ -0.7
MSH4-201ENST00000263187 FOXO4P98177 505 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 SCARF1Q14162 830 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 LRP10Q7Z4F1 713 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 AIFM3Q96NN9 605 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 MAST3O60307 1309 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 PFKFB2O60825 505 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 SKILP12757 684 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 ILDR1Q86SU0 546 aaPredicted RBP10.69□□□□□ -0.7
MSH4-201ENST00000263187 TDRD7Q8NHU6 1098 aaKnown RBP10.69□□□□□ -0.7
MSH4-201ENST00000263187 FAM89AQ96GI7 184 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 C19orf44Q9H6X5 657 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 USP54Q70EL1 1684 aa10.69□□□□□ -0.7
MSH4-201ENST00000263187 SMC2O95347 1197 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 NDUFA8P51970 172 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 SNW1Q13573 536 aaKnown RBP10.68□□□□□ -0.7
MSH4-201ENST00000263187 INCENPQ9NQS7 918 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 PCDHA7Q9UN72 937 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 KDM3BQ7LBC6 1761 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 C1orf167Q5SNV9 1468 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 MED1Q15648 1581 aaPredicted RBP10.68□□□□□ -0.7
MSH4-201ENST00000263187 AHDC1Q5TGY3 1603 aaPredicted RBP10.68□□□□□ -0.7
MSH4-201ENST00000263187 A0A0G2JS52 829 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 GPTP24298 496 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 IQCB1Q15051 598 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 NKX2-3Q8TAU0 364 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 KLF18A0A0U1RQI7 1052 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 CCDC69A6NI79 296 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 APPP05067 770 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 FDPSP14324 419 aaKnown RBP10.68□□□□□ -0.7
MSH4-201ENST00000263187 STK38Q15208 465 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 TSGA10IPQ3SY00 556 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 TAF7LQ5H9L4 462 aa10.68□□□□□ -0.7
MSH4-201ENST00000263187 MTERF4Q7Z6M4 381 aaKnown RBP10.68□□□□□ -0.7
MSH4-201ENST00000263187 ZSCAN16Q9H4T2 348 aaPredicted RBP10.68□□□□□ -0.7
MSH4-201ENST00000263187 MEGF6O75095 1541 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 GOLGA8BA8MQT2 603 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 UBE2Q2LH0YL09 131 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 NCBP1Q09161 790 aaKnown RBP10.67□□□□□ -0.7
MSH4-201ENST00000263187 ZRSR1Q15695 479 aaKnown RBP10.67□□□□□ -0.7
MSH4-201ENST00000263187 DPCR1Q3MIW9 517 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 ZBTB9Q96C00 473 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 CWC25Q9NXE8 425 aaPredicted RBP10.67□□□□□ -0.7
MSH4-201ENST00000263187 TPM3P06753 285 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 GOLGA8FQ08AF8 430 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 GOLGA8DPQ0D2H9 430 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 STX1AQ16623 288 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 TTC39AQ5SRH9 613 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 LRRC8AQ8IWT6 810 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 CCDC112Q8NEF3 446 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 PLBD2Q8NHP8 589 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 STRN4Q9NRL3 753 aa10.67□□□□□ -0.7
MSH4-201ENST00000263187 CPLX1O14810 134 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 RNF113AO15541 343 aaKnown RBP10.66□□□□□ -0.7
MSH4-201ENST00000263187 GTF2F1P35269 517 aaKnown RBP eCLIP10.66□□□□□ -0.7
MSH4-201ENST00000263187 CASP7P55210 303 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 RABL6Q3YEC7 729 aaPredicted RBP10.66□□□□□ -0.7
MSH4-201ENST00000263187 CEP135Q66GS9 1140 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 DHX40Q8IX18 779 aaKnown RBP10.66□□□□□ -0.7
MSH4-201ENST00000263187 CCDC82Q8N4S0 544 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 SMARCC2Q8TAQ2 1214 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 CERKQ8TCT0 537 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 DCAF5Q96JK2 942 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 MYL10Q9BUA6 226 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 PUS7LQ9H0K6 701 aaKnown RBP10.66□□□□□ -0.7
MSH4-201ENST00000263187 PRDM4Q9UKN5 801 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 CRYBG1Q9Y4K1 1723 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 ZAP70P43403 619 aa10.66□□□□□ -0.7
MSH4-201ENST00000263187 ORC3Q9UBD5 711 aaPredicted RBP10.66□□□□□ -0.7
MSH4-201ENST00000263187 RCOR1Q9UKL0 485 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms