RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SLC39A6Q13433 755 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 CCDC186Q7Z3E2 898 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 CERS3Q8IU89 383 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 PHACTR3Q96KR7 559 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 TRIM47Q96LD4 638 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 IMPG2Q9BZV3 1241 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 GOPCQ9HD26 462 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 PA2G4Q9UQ80 394 aaKnown RBP21.8■■□□□ 1.08
UPF1-201ENST00000262803 TCOF1Q13428 1488 aaKnown RBP21.8■■□□□ 1.08
UPF1-201ENST00000262803 PRIM1P49642 420 aaKnown RBP21.8■■□□□ 1.08
UPF1-201ENST00000262803 GNG11P61952 73 aa21.8■■□□□ 1.08
UPF1-201ENST00000262803 MRPS27Q92552 414 aaKnown RBP21.8■■□□□ 1.08
UPF1-201ENST00000262803 TMCO5BA8MYB1 307 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 NOLC1Q14978 699 aaKnown RBP eCLIP21.79■■□□□ 1.08
UPF1-201ENST00000262803 ALG1Q9BT22 464 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 SLC4A4Q9Y6R1 1079 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 FLT4P35916 1363 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 RIMS2Q9UQ26 1411 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 IL2RBP14784 551 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 NMIQ13287 307 aaPredicted RBP21.79■■□□□ 1.08
UPF1-201ENST00000262803 SPECC1LQ69YQ0 1117 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 A2MP01023 1474 aa21.79■■□□□ 1.08
UPF1-201ENST00000262803 CCDC171Q6TFL3 1326 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 CCDC175P0C221 793 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 TNNI2P48788 182 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 UBASH3AP57075 661 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 LINS1Q8NG48 757 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 SMARCC2Q8TAQ2 1214 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 RAD50Q92878 1312 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 MACROD2A1Z1Q3 448 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 LMBR1Q8WVP7 490 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 VAT1LQ9HCJ6 419 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 ZNF219Q9P2Y4 722 aaPredicted RBP21.78■■□□□ 1.08
UPF1-201ENST00000262803 IKBKGQ9Y6K9 419 aa21.78■■□□□ 1.08
UPF1-201ENST00000262803 LIG1P18858 919 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 TUBB4BP68371 445 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 PARP3Q9Y6F1 533 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 N4BP3O15049 544 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 SKILP12757 684 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 RASAL2Q9UJF2 1139 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 ZKSCAN5Q9Y2L8 839 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 STAT6P42226 847 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 STX8Q9UNK0 236 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 AK2P54819 239 aa21.77■■□□□ 1.08
UPF1-201ENST00000262803 PSMA7O14818 248 aa21.76■■□□□ 1.07
UPF1-201ENST00000262803 PPM1FP49593 454 aaPredicted RBP21.76■■□□□ 1.07
UPF1-201ENST00000262803 SPECC1Q5M775 1068 aa21.76■■□□□ 1.07
UPF1-201ENST00000262803 DNAJC25Q9H1X3 360 aa21.76■■□□□ 1.07
UPF1-201ENST00000262803 WDR7Q9Y4E6 1490 aa21.76■■□□□ 1.07
UPF1-201ENST00000262803 PPP1R2P41236 205 aa21.76■■□□□ 1.07
UPF1-201ENST00000262803 KIAA0753Q2KHM9 967 aa21.76■■□□□ 1.07
UPF1-201ENST00000262803 SELENOOQ9BVL4 669 aa21.76■■□□□ 1.07
UPF1-201ENST00000262803 NOP2P46087 812 aaKnown RBP21.75■■□□□ 1.07
UPF1-201ENST00000262803 C6orf163Q5TEZ5 329 aa21.75■■□□□ 1.07
UPF1-201ENST00000262803 SPAG5Q96R06 1193 aa21.75■■□□□ 1.07
UPF1-201ENST00000262803 MAGEB6P1A0A0J9YX57 407 aa21.75■■□□□ 1.07
UPF1-201ENST00000262803 RRP36Q96EU6 259 aaKnown RBP21.75■■□□□ 1.07
UPF1-201ENST00000262803 SYNCQ9H7C4 482 aa21.75■■□□□ 1.07
UPF1-201ENST00000262803 BABAM1Q9NWV8 329 aa21.75■■□□□ 1.07
UPF1-201ENST00000262803 RTCBQ9Y3I0 505 aaKnown RBP21.75■■□□□ 1.07
UPF1-201ENST00000262803 JDP2Q8WYK2 163 aa21.75■■□□□ 1.07
UPF1-201ENST00000262803 ZSWIM4Q9H7M6 989 aa21.75■■□□□ 1.07
UPF1-201ENST00000262803 CCDC155Q8N6L0 562 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 BICDL2A1A5D9 508 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 HLTFQ14527 1009 aaKnown RBP eCLIP21.74■■□□□ 1.07
UPF1-201ENST00000262803 DHX37Q8IY37 1157 aaKnown RBP21.74■■□□□ 1.07
UPF1-201ENST00000262803 CHMLP26374 656 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 GNA11P29992 359 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 BMS1Q14692 1282 aaKnown RBP21.74■■□□□ 1.07
UPF1-201ENST00000262803 INTS4Q96HW7 963 aaKnown RBP21.74■■□□□ 1.07
UPF1-201ENST00000262803 USP26Q9BXU7 913 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 STMN4Q9H169 189 aaPredicted RBP21.74■■□□□ 1.07
UPF1-201ENST00000262803 STK24Q9Y6E0 443 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 PHACTR2O75167 634 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 PCDH11XQ9BZA7 1347 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 PCDH11YQ9BZA8 1340 aa21.74■■□□□ 1.07
UPF1-201ENST00000262803 RBM28Q9NW13 759 aaKnown RBP21.74■■□□□ 1.07
UPF1-201ENST00000262803 PUF60Q9UHX1 559 aaKnown RBP21.74■■□□□ 1.07
UPF1-201ENST00000262803 ARHGEF12Q9NZN5 1544 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 UBAP1LF5GYI3 381 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 AKR1B10O60218 316 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 LMAN1P49257 510 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 DCAF5Q96JK2 942 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 ZC3H12CQ9C0D7 883 aaKnown RBP21.73■■□□□ 1.07
UPF1-201ENST00000262803 NIP7Q9Y221 180 aaKnown RBP eCLIP21.73■■□□□ 1.07
UPF1-201ENST00000262803 AOPEPQ8N6M6 819 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 CEP112Q8N8E3 955 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 HOOK2Q96ED9 719 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 SPDYE3A6NKU9 549 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 TRAPPC8Q9Y2L5 1435 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 A0A1W2PP64 1363 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 NAPAP54920 295 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 CCDC77Q9BR77 488 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 NPATQ14207 1427 aa21.73■■□□□ 1.07
UPF1-201ENST00000262803 MYCNP04198 464 aaPredicted RBP21.72■■□□□ 1.07
UPF1-201ENST00000262803 MARCKSP29966 332 aaPredicted RBP21.72■■□□□ 1.07
UPF1-201ENST00000262803 RRAGBQ5VZM2 374 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 PAG1Q9NWQ8 432 aa21.72■■□□□ 1.07
UPF1-201ENST00000262803 ZBTB7BO15156 539 aaPredicted RBP21.72■■□□□ 1.07
UPF1-201ENST00000262803 AFMP43652 599 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms