RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MKNK2Q9HBH9 465 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 GNAT2P19087 354 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 IQCA1Q86XH1 822 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 SEC31BQ9NQW1 1179 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 CHRNDQ07001 517 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 TLR7Q9NYK1 1049 aaKnown RBP13.66□□□□□ -0.22
VPS4A-201ENST00000254950 GOLGA6L3A6NEY3 463 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 H0YIN7 160 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 RABL6Q3YEC7 729 aaPredicted RBP13.66□□□□□ -0.22
VPS4A-201ENST00000254950 BRMS1Q9HCU9 246 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 LTN1O94822 1766 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 RANBP6O60518 1105 aaKnown RBP13.66□□□□□ -0.22
VPS4A-201ENST00000254950 TXNRD1Q16881 649 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 MFSD6Q6ZSS7 791 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 SPATA5Q8NB90 893 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 BICD2Q8TD16 824 aa13.66□□□□□ -0.22
VPS4A-201ENST00000254950 ARHGEF1Q92888 912 aaKnown RBP13.66□□□□□ -0.22
VPS4A-201ENST00000254950 MAGEB6P1A0A0J9YX57 407 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 PDE6BP35913 854 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 CCDC102BQ68D86 513 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 SYNE4Q8N205 404 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 RASSF8Q8NHQ8 419 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 BCL9O00512 1426 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 IFIT3O14879 490 aaKnown RBP13.65□□□□□ -0.22
VPS4A-201ENST00000254950 LDHBP07195 334 aaKnown RBP13.65□□□□□ -0.22
VPS4A-201ENST00000254950 MCM5P33992 734 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 MSL1Q68DK7 614 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 TMX3Q96JJ7 454 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 LARP6Q9BRS8 491 aaKnown RBP13.65□□□□□ -0.22
VPS4A-201ENST00000254950 ALDH1B1P30837 517 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 UBE4AQ14139 1066 aa13.65□□□□□ -0.22
VPS4A-201ENST00000254950 MARCH6O60337 910 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 KDM4AO75164 1064 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 DEKP35659 375 aaKnown RBP13.64□□□□□ -0.23
VPS4A-201ENST00000254950 RIMBP2O15034 1052 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 ATP2B2Q01814 1243 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 CCDC129Q6ZRS4 1044 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 MIGA1Q8NAN2 632 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 ADORA1P30542 326 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 FOXO4P98177 505 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 ZNF444Q8N0Y2 327 aaPredicted RBP13.64□□□□□ -0.23
VPS4A-201ENST00000254950 LINC00116Q8NCU8 138 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 DDX11Q96FC9 970 aa13.64□□□□□ -0.23
VPS4A-201ENST00000254950 MBD4O95243 580 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 WDR66Q8TBY9 1149 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 TCEANC2Q96MN5 208 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 UTYO14607 1347 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 CCDC196A0A1B0GTZ2 297 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 CAMTA2O94983 1202 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 HMGN5P82970 282 aaKnown RBP13.63□□□□□ -0.23
VPS4A-201ENST00000254950 PDE4BQ07343 736 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 ZNF34Q8IZ26 560 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 BRF1Q92994 677 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 CNTNAP4Q9C0A0 1308 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 CNNM2Q9H8M5 875 aa13.63□□□□□ -0.23
VPS4A-201ENST00000254950 GOLGA8BA8MQT2 603 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 GPAA1O43292 621 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 TBC1D9BQ66K14 1250 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 DPP8Q6V1X1 898 aaPredicted RBP13.62□□□□□ -0.23
VPS4A-201ENST00000254950 JAG2Q9Y219 1238 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 CTDP1Q9Y5B0 961 aaPredicted RBP13.62□□□□□ -0.23
VPS4A-201ENST00000254950 ABCC6O95255 1503 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 FIBPO43427 364 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 MBD3O95983 291 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 PHKA1P46020 1223 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 TMEM67Q5HYA8 995 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 CRACR2BQ8N4Y2 399 aaPredicted RBP13.62□□□□□ -0.23
VPS4A-201ENST00000254950 PLA2G12BQ9BX93 195 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 KRT23Q9C075 422 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 SLC12A7Q9Y666 1083 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 IKQ13123 557 aaPredicted RBP13.62□□□□□ -0.23
VPS4A-201ENST00000254950 PI4K2BQ8TCG2 481 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 ZNF396Q96N95 335 aaPredicted RBP13.62□□□□□ -0.23
VPS4A-201ENST00000254950 PLCG2P16885 1265 aa13.62□□□□□ -0.23
VPS4A-201ENST00000254950 TRAK2O60296 914 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 PRPF40AO75400 957 aaKnown RBP13.61□□□□□ -0.23
VPS4A-201ENST00000254950 MCM4P33991 863 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 GYG1P46976 350 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 BCAMP50895 628 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 KRT85P78386 507 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 A0A0D9SFI3 127 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 F8W031 263 aaPredicted RBP13.61□□□□□ -0.23
VPS4A-201ENST00000254950 ATP2B4P23634 1241 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 CCDC73Q6ZRK6 1079 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 WASF1Q92558 559 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 SLC27A2O14975 620 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 HSPA4P34932 840 aa13.61□□□□□ -0.23
VPS4A-201ENST00000254950 INTS5Q6P9B9 1019 aaKnown RBP13.61□□□□□ -0.23
VPS4A-201ENST00000254950 ZNF532Q9HCE3 1301 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 CCT2P78371 535 aaKnown RBP13.6□□□□□ -0.23
VPS4A-201ENST00000254950 GSE1Q14687 1217 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 ESR2Q92731 530 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 LRRC2Q9BYS8 371 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 SNX14Q9Y5W7 946 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 VPS53Q5VIR6 699 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 DHX32Q7L7V1 743 aaKnown RBP13.6□□□□□ -0.23
VPS4A-201ENST00000254950 MPNDQ8N594 471 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 TSPY2A6NKD2 308 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 GOLGA8AA7E2F4 631 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 BBOX1O75936 387 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms