RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FOXD4L5Q5VV16 416 aaPredicted RBP15.9■□□□□ 0.14
LDLR-201ENST00000252444 FOXD4L4Q8WXT5 416 aaPredicted RBP15.9■□□□□ 0.14
LDLR-201ENST00000252444 C8orf76Q96K31 380 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 STK24Q9Y6E0 443 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 SLC4A4Q9Y6R1 1079 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 COPRSQ9NQ92 184 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 ATP5JP18859 108 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 SPATA32Q96LK8 384 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 TSPY2A6NKD2 308 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 WTAPQ15007 396 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 KANK3Q6NY19 840 aa15.9■□□□□ 0.14
LDLR-201ENST00000252444 PALLDQ8WX93 1383 aa15.89■□□□□ 0.14
LDLR-201ENST00000252444 RANBP6O60518 1105 aaKnown RBP15.89■□□□□ 0.13
LDLR-201ENST00000252444 DHX37Q8IY37 1157 aaKnown RBP15.89■□□□□ 0.13
LDLR-201ENST00000252444 APPBP2Q92624 585 aa15.89■□□□□ 0.13
LDLR-201ENST00000252444 SMARCE1Q969G3 411 aa15.89■□□□□ 0.13
LDLR-201ENST00000252444 PLEKHM2Q8IWE5 1019 aa15.89■□□□□ 0.13
LDLR-201ENST00000252444 TMEM87BQ96K49 555 aa15.89■□□□□ 0.13
LDLR-201ENST00000252444 TSPY26PQ9H489 355 aa15.89■□□□□ 0.13
LDLR-201ENST00000252444 UBE4AQ14139 1066 aa15.89■□□□□ 0.13
LDLR-201ENST00000252444 CDHR2Q9BYE9 1310 aa15.89■□□□□ 0.13
LDLR-201ENST00000252444 SMTNL1A8MU46 457 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 MCTP2Q6DN12 878 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 CEP57L1Q8IYX8 460 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 RPAP1Q9BWH6 1393 aaPredicted RBP15.88■□□□□ 0.13
LDLR-201ENST00000252444 CALML3P27482 149 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 ZNF76P36508 570 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 CRKLP46109 303 aaKnown RBP15.88■□□□□ 0.13
LDLR-201ENST00000252444 SLC9C2Q5TAH2 1124 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 GZF1Q9H116 711 aaPredicted RBP15.88■□□□□ 0.13
LDLR-201ENST00000252444 KRT18P05783 430 aaKnown RBP15.88■□□□□ 0.13
LDLR-201ENST00000252444 IARSP41252 1262 aaKnown RBP15.88■□□□□ 0.13
LDLR-201ENST00000252444 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.88■□□□□ 0.13
LDLR-201ENST00000252444 LZTS2Q9BRK4 669 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 FGFR1OPO95684 399 aaKnown RBP15.88■□□□□ 0.13
LDLR-201ENST00000252444 A1BGP04217 495 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 EPS15P42566 896 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 G2E3Q7L622 706 aa15.88■□□□□ 0.13
LDLR-201ENST00000252444 LUC7LQ9NQ29 371 aaKnown RBP15.88■□□□□ 0.13
LDLR-201ENST00000252444 METAP2P50579 478 aaKnown RBP eCLIP15.87■□□□□ 0.134e-7■□□□□ 8.7
LDLR-201ENST00000252444 RC3H1Q5TC82 1133 aaKnown RBP15.87■□□□□ 0.13
LDLR-201ENST00000252444 INTS4Q96HW7 963 aaKnown RBP15.87■□□□□ 0.13
LDLR-201ENST00000252444 SUCLG2Q96I99 432 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 IBTKQ9P2D0 1353 aaPredicted RBP15.87■□□□□ 0.13
LDLR-201ENST00000252444 BBOX1O75936 387 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 EIF6P56537 245 aaKnown RBP15.87■□□□□ 0.13
LDLR-201ENST00000252444 ABCC12Q96J65 1359 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 AFF2P51816 1311 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 A0A1B0GUL7 405 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 RPS6KA4O75676 772 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 CCDC96Q2M329 555 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 RFX7Q2KHR2 1363 aa15.87■□□□□ 0.13
LDLR-201ENST00000252444 DPP8Q6V1X1 898 aaPredicted RBP15.87■□□□□ 0.13
LDLR-201ENST00000252444 TSPY3P0CV98 308 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 TSPY8P0CW00 308 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 ABCC6O95255 1503 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 UFL1O94874 794 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 KDM2BQ8NHM5 1336 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 RPS8P62241 208 aaKnown RBP15.86■□□□□ 0.13
LDLR-201ENST00000252444 KBTBD3Q8NAB2 608 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 RBM8AQ9Y5S9 174 aaKnown RBP15.86■□□□□ 0.13
LDLR-201ENST00000252444 CCDC194A0A1B0GVG4 234 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 RLBP1P12271 317 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 SEPT12Q8IYM1 358 aa15.86■□□□□ 0.13
LDLR-201ENST00000252444 DSCC1Q9BVC3 393 aa15.85■□□□□ 0.13
LDLR-201ENST00000252444 ME1P48163 572 aa15.85■□□□□ 0.13
LDLR-201ENST00000252444 TRIM21P19474 475 aaKnown RBP15.85■□□□□ 0.13
LDLR-201ENST00000252444 DEKP35659 375 aaKnown RBP15.85■□□□□ 0.13
LDLR-201ENST00000252444 AMPD3Q01432 767 aa15.85■□□□□ 0.13
LDLR-201ENST00000252444 PCMTD1Q96MG8 357 aaPredicted RBP15.85■□□□□ 0.13
LDLR-201ENST00000252444 XAGE2Q96GT9 111 aa15.85■□□□□ 0.13
LDLR-201ENST00000252444 LLPHQ9BRT6 129 aaKnown RBP15.85■□□□□ 0.13
LDLR-201ENST00000252444 PES1O00541 588 aaKnown RBP15.84■□□□□ 0.13
LDLR-201ENST00000252444 ZBTB43O43298 467 aa15.84■□□□□ 0.13
LDLR-201ENST00000252444 NBPF7P0C2Y1 421 aaPredicted RBP15.84■□□□□ 0.13
LDLR-201ENST00000252444 NMIQ13287 307 aaPredicted RBP15.84■□□□□ 0.13
LDLR-201ENST00000252444 PPP4R3AQ6IN85 833 aa15.84■□□□□ 0.13
LDLR-201ENST00000252444 STXBP4Q6ZWJ1 553 aa15.84■□□□□ 0.13
LDLR-201ENST00000252444 CHMLP26374 656 aa15.84■□□□□ 0.13
LDLR-201ENST00000252444 NSFL1CQ9UNZ2 370 aaKnown RBP15.84■□□□□ 0.13
LDLR-201ENST00000252444 IFIT1BQ5T764 474 aaKnown RBP15.84■□□□□ 0.13
LDLR-201ENST00000252444 SPINK5Q9NQ38 1064 aaPredicted RBP15.84■□□□□ 0.13
LDLR-201ENST00000252444 XDHP47989 1333 aa15.84■□□□□ 0.13
LDLR-201ENST00000252444 TRAK2O60296 914 aa15.84■□□□□ 0.13
LDLR-201ENST00000252444 TNFAIP1Q13829 316 aa15.84■□□□□ 0.13
LDLR-201ENST00000252444 DDX19AQ9NUU7 478 aaKnown RBP15.84■□□□□ 0.13
LDLR-201ENST00000252444 KRT24Q2M2I5 525 aa15.83■□□□□ 0.13
LDLR-201ENST00000252444 MPNDQ8N594 471 aa15.83■□□□□ 0.13
LDLR-201ENST00000252444 TNMDQ9H2S6 317 aa15.83■□□□□ 0.13
LDLR-201ENST00000252444 FAM89AQ96GI7 184 aa15.83■□□□□ 0.12
LDLR-201ENST00000252444 GJD4Q96KN9 370 aaPredicted RBP15.83■□□□□ 0.12
LDLR-201ENST00000252444 FEZ1Q99689 392 aa15.83■□□□□ 0.12
LDLR-201ENST00000252444 STK3Q13188 491 aa15.83■□□□□ 0.12
LDLR-201ENST00000252444 ARPP21Q9UBL0 812 aaPredicted RBP15.83■□□□□ 0.12
LDLR-201ENST00000252444 NIM1KQ8IY84 436 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 STAP2Q9UGK3 403 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 SPATA31A1Q5TZJ5 1347 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 RTN1Q16799 776 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 DHX32Q7L7V1 743 aaKnown RBP15.82■□□□□ 0.12
LDLR-201ENST00000252444 ERMNQ8TAM6 284 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms