RNA–Protein interactions for RNA: ENST00000248668.4

LRFN1-201, Transcript of leucine rich repeat and fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN1, Length 3,381 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1-201ENST00000248668 SCRN1Q12765 414 aa18.66■□□□□ 0.58
LRFN1-201ENST00000248668 BCL9O00512 1426 aa18.66■□□□□ 0.58
LRFN1-201ENST00000248668 E7EWF7 191 aa18.65■□□□□ 0.58
LRFN1-201ENST00000248668 CSF1RP07333 972 aa18.65■□□□□ 0.58
LRFN1-201ENST00000248668 CEBPZQ03701 1054 aaKnown RBP18.65■□□□□ 0.58
LRFN1-201ENST00000248668 TTC6Q86TZ1 520 aa18.65■□□□□ 0.58
LRFN1-201ENST00000248668 TMEM87AQ8NBN3 555 aa18.65■□□□□ 0.58
LRFN1-201ENST00000248668 PUS7LQ9H0K6 701 aaKnown RBP18.65■□□□□ 0.58
LRFN1-201ENST00000248668 UBN2Q6ZU65 1347 aa18.65■□□□□ 0.58
LRFN1-201ENST00000248668 ANKRD18BA2A2Z9 1011 aa18.65■□□□□ 0.58
LRFN1-201ENST00000248668 CCDC183Q5T5S1 534 aa18.65■□□□□ 0.58
LRFN1-201ENST00000248668 H3BQV1 296 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 IFFO2Q5TF58 517 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 DHX32Q7L7V1 743 aaKnown RBP18.64■□□□□ 0.57
LRFN1-201ENST00000248668 RFX7Q2KHR2 1363 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 PDCP20941 246 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 MCAMP43121 646 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 PLCB2Q00722 1185 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 GUCY1B3Q02153 619 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 FAM184AQ8NB25 1140 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 DSCC1Q9BVC3 393 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 RIPOR2Q9Y4F9 1068 aa18.64■□□□□ 0.57
LRFN1-201ENST00000248668 IDH1O75874 414 aaKnown RBP18.63■□□□□ 0.57
LRFN1-201ENST00000248668 ATP6V1AP38606 617 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 KCNQ4P56696 695 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 PIP4K2BP78356 416 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 KRT85P78386 507 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 DDB1Q16531 1140 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 CAMK4Q16566 473 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 NHSL1Q5SYE7 1610 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 PHF14O94880 888 aa18.63■□□□□ 0.57
LRFN1-201ENST00000248668 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.62■□□□□ 0.57
LRFN1-201ENST00000248668 ITGB4P16144 1822 aa18.62■□□□□ 0.57
LRFN1-201ENST00000248668 PHKA1P46020 1223 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 PLA2G12BQ9BX93 195 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 DISP2A7MBM2 1401 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 SEC31BQ9NQW1 1179 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 RIC1Q4ADV7 1423 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 FOXP2O15409 715 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 FGAP02671 866 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 LIG1P18858 919 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 SMIM5Q71RC9 77 aa18.61■□□□□ 0.57
LRFN1-201ENST00000248668 ALDH8A1Q9H2A2 487 aaPredicted RBP18.61■□□□□ 0.57
LRFN1-201ENST00000248668 SPATA32Q96LK8 384 aa18.6■□□□□ 0.57
LRFN1-201ENST00000248668 DENND2AQ9ULE3 1009 aa18.6■□□□□ 0.57
LRFN1-201ENST00000248668 GOLGA6L4A6NEF3 574 aa18.6■□□□□ 0.57
LRFN1-201ENST00000248668 APPP05067 770 aa18.6■□□□□ 0.57
LRFN1-201ENST00000248668 SLC9C2Q5TAH2 1124 aa18.6■□□□□ 0.57
LRFN1-201ENST00000248668 SUSD4Q5VX71 490 aa18.6■□□□□ 0.57
LRFN1-201ENST00000248668 PDCL3Q9H2J4 239 aa18.6■□□□□ 0.57
LRFN1-201ENST00000248668 GPAA1O43292 621 aa18.59■□□□□ 0.57
LRFN1-201ENST00000248668 CSPP1Q1MSJ5 1256 aa18.59■□□□□ 0.57
LRFN1-201ENST00000248668 FTOQ9C0B1 505 aaKnown RBP eCLIP18.59■□□□□ 0.57
LRFN1-201ENST00000248668 USP25Q9UHP3 1055 aa18.59■□□□□ 0.57
LRFN1-201ENST00000248668 PTPDC1A2A3K4 754 aa18.59■□□□□ 0.57
LRFN1-201ENST00000248668 KCNQ2O43526 872 aa18.59■□□□□ 0.57
LRFN1-201ENST00000248668 PDE8AO60658 829 aa18.59■□□□□ 0.57
LRFN1-201ENST00000248668 CRKLP46109 303 aaKnown RBP18.59■□□□□ 0.57
LRFN1-201ENST00000248668 MARCH10Q8NA82 808 aaPredicted RBP18.59■□□□□ 0.57
LRFN1-201ENST00000248668 ZHX1Q9UKY1 873 aaPredicted RBP18.59■□□□□ 0.57
LRFN1-201ENST00000248668 KDM4AO75164 1064 aa18.58■□□□□ 0.57
LRFN1-201ENST00000248668 CTDNEP1O95476 244 aa18.58■□□□□ 0.57
LRFN1-201ENST00000248668 IL6STP40189 918 aaPredicted RBP18.58■□□□□ 0.57
LRFN1-201ENST00000248668 NSUN7Q8NE18 718 aaKnown RBP18.58■□□□□ 0.57
LRFN1-201ENST00000248668 PIH1D3Q9NQM4 214 aaKnown RBP18.58■□□□□ 0.57
LRFN1-201ENST00000248668 CDHR2Q9BYE9 1310 aa18.58■□□□□ 0.56
LRFN1-201ENST00000248668 PTMAP06454 111 aaKnown RBP18.58■□□□□ 0.56
LRFN1-201ENST00000248668 HMGB1P09429 215 aaKnown RBP18.58■□□□□ 0.56
LRFN1-201ENST00000248668 MSNP26038 577 aaKnown RBP18.58■□□□□ 0.56
LRFN1-201ENST00000248668 EXOSC10Q01780 885 aaKnown RBP18.58■□□□□ 0.56
LRFN1-201ENST00000248668 CKAP2LQ8IYA6 745 aa18.58■□□□□ 0.56
LRFN1-201ENST00000248668 APPBP2Q92624 585 aa18.58■□□□□ 0.56
LRFN1-201ENST00000248668 PDE8BO95263 885 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 ITPK1Q13572 414 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 IMMTQ16891 758 aaKnown RBP18.57■□□□□ 0.56
LRFN1-201ENST00000248668 CCDC102BQ68D86 513 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 ZSCAN30Q86W11 494 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 ROBO1Q9Y6N7 1651 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 PFKFB2O60825 505 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 OTUD7BQ6GQQ9 843 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 INTS5Q6P9B9 1019 aaKnown RBP18.57■□□□□ 0.56
LRFN1-201ENST00000248668 PDLIM2Q96JY6 352 aa18.57■□□□□ 0.56
LRFN1-201ENST00000248668 LOC102724428A0A0B4J2F2 783 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 PDIA4P13667 645 aaKnown RBP18.56■□□□□ 0.56
LRFN1-201ENST00000248668 SIK1P57059 783 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 LEO1Q8WVC0 666 aaPredicted RBP18.56■□□□□ 0.56
LRFN1-201ENST00000248668 PRDM10Q9NQV6 1147 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 CCDC87Q9NVE4 849 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 FAM13BQ9NYF5 915 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 PRDM4Q9UKN5 801 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 PDIA3P30101 505 aaKnown RBP18.56■□□□□ 0.56
LRFN1-201ENST00000248668 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.56■□□□□ 0.56
LRFN1-201ENST00000248668 FBXO3Q9UK99 471 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 WWC3Q9ULE0 1092 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 IQSEC3Q9UPP2 1182 aaPredicted RBP18.56■□□□□ 0.56
LRFN1-201ENST00000248668 STK11IPQ8N1F8 1099 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 BICD2Q8TD16 824 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 DACT1Q9NYF0 836 aa18.56■□□□□ 0.56
LRFN1-201ENST00000248668 LRRFIP1Q32MZ4 808 aaKnown RBP18.55■□□□□ 0.56
LRFN1-201ENST00000248668 ZNF34Q8IZ26 560 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms