RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CLCN1P35523 988 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 CEP85Q6P2H3 762 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 BRAPQ7Z569 592 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 GPATCH8Q9UKJ3 1502 aaKnown RBP15.42■□□□□ 0.06
SF3A1-201ENST00000215793 SYT1P21579 422 aa15.42■□□□□ 0.06
SF3A1-201ENST00000215793 KRT79Q5XKE5 535 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 SMC5Q8IY18 1101 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 TSNARE1Q96NA8 513 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 UTP14AQ9BVJ6 771 aaKnown RBP15.41■□□□□ 0.06
SF3A1-201ENST00000215793 ZKSCAN5Q9Y2L8 839 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 COMMD10Q9Y6G5 202 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 KRT86O43790 486 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 ATP6V1AP38606 617 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 DHX32Q7L7V1 743 aaKnown RBP15.41■□□□□ 0.06
SF3A1-201ENST00000215793 OGFOD1Q8N543 542 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 LMBR1Q8WVP7 490 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 IQSEC3Q9UPP2 1182 aaPredicted RBP15.41■□□□□ 0.06
SF3A1-201ENST00000215793 NIP7Q9Y221 180 aaKnown RBP eCLIP15.41■□□□□ 0.06
SF3A1-201ENST00000215793 UHRF1BP1LA0JNW5 1464 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 MAGEB6P1A0A0J9YX57 407 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 C6orf163Q5TEZ5 329 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 ZNF804AQ7Z570 1209 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 TYRO3Q06418 890 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 KIF5AQ12840 1032 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 CCDC77Q9BR77 488 aa15.41■□□□□ 0.06
SF3A1-201ENST00000215793 TTC12Q9H892 705 aaPredicted RBP15.41■□□□□ 0.06
SF3A1-201ENST00000215793 MTHFSDQ2M296 383 aaKnown RBP15.4■□□□□ 0.06
SF3A1-201ENST00000215793 NYXQ9GZU5 481 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 RASAL2Q9UJF2 1139 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 BICDL2A1A5D9 508 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 XRCC6P12956 609 aaKnown RBP eCLIP15.4■□□□□ 0.06
SF3A1-201ENST00000215793 ATL3Q6DD88 541 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 C16orf71Q8IYS4 520 aaPredicted RBP15.4■□□□□ 0.06
SF3A1-201ENST00000215793 PPM1EQ8WY54 764 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 DHX58Q96C10 678 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 SMARCC2Q8TAQ2 1214 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 SYNCQ9H7C4 482 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 MMRN2Q9H8L6 949 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 PA2G4Q9UQ80 394 aaKnown RBP15.4■□□□□ 0.06
SF3A1-201ENST00000215793 C8orf34Q49A92 452 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 CREB3L3Q68CJ9 461 aa15.4■□□□□ 0.06
SF3A1-201ENST00000215793 LMOD1P29536 600 aaPredicted RBP15.39■□□□□ 0.05
SF3A1-201ENST00000215793 AK2P54819 239 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 HS1BP3Q53T59 392 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 ZBTB40Q9NUA8 1239 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 GNA11P29992 359 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 RAB3GAP1Q15042 981 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 TMEM87AQ8NBN3 555 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 CCDC42Q96M95 316 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 IMPG2Q9BZV3 1241 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 CTAGE9A4FU28 777 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 PHACTR2O75167 634 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 SLU7O95391 586 aaKnown RBP15.39■□□□□ 0.05
SF3A1-201ENST00000215793 HSP90AA4PQ58FG1 418 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 PPP1R14CQ8TAE6 165 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 DRC1Q96MC2 740 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 TPTE2Q6XPS3 522 aa15.39■□□□□ 0.05
SF3A1-201ENST00000215793 HS2ST1Q7LGA3 356 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 FERP16591 822 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 RRP36Q96EU6 259 aaKnown RBP15.38■□□□□ 0.05
SF3A1-201ENST00000215793 ZNF830Q96NB3 372 aaPredicted RBP15.38■□□□□ 0.05
SF3A1-201ENST00000215793 SPDYE3A6NKU9 549 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 OPA1O60313 960 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 KRT2P35908 639 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 SREK1Q8WXA9 508 aaKnown RBP15.38■□□□□ 0.05
SF3A1-201ENST00000215793 PRAG1Q86YV5 1406 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 A0A1W2PRG0 241 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 PTPDC1A2A3K4 754 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 MYCNP04198 464 aaPredicted RBP15.38■□□□□ 0.05
SF3A1-201ENST00000215793 TUBBP07437 444 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 LRRC45Q96CN5 670 aa15.38■□□□□ 0.05
SF3A1-201ENST00000215793 RNF216Q9NWF9 866 aaPredicted RBP15.38■□□□□ 0.05
SF3A1-201ENST00000215793 DZIP3Q86Y13 1208 aaKnown RBP15.37■□□□□ 0.05
SF3A1-201ENST00000215793 IQUBQ8NA54 791 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 NSRP1Q9H0G5 558 aaKnown RBP15.37■□□□□ 0.05
SF3A1-201ENST00000215793 ATP2A1O14983 1001 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 DCAF5Q96JK2 942 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 IQCGQ9H095 443 aaKnown RBP15.37■□□□□ 0.05
SF3A1-201ENST00000215793 STMN4Q9H169 189 aaPredicted RBP15.37■□□□□ 0.05
SF3A1-201ENST00000215793 B4DLN1 442 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 IL2RBP14784 551 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 CHMLP26374 656 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 MRPL12P52815 198 aaKnown RBP15.37■□□□□ 0.05
SF3A1-201ENST00000215793 DDB1Q16531 1140 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 RUFY3Q7L099 469 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 CEP63Q96MT8 703 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 PTGS1P23219 599 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 PLEKHM2Q8IWE5 1019 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 ZC3H12CQ9C0D7 883 aaKnown RBP15.37■□□□□ 0.05
SF3A1-201ENST00000215793 MAP3K5Q99683 1374 aa15.37■□□□□ 0.05
SF3A1-201ENST00000215793 DUOX2Q9NRD8 1548 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 PRIM1P49642 420 aaKnown RBP15.36■□□□□ 0.05
SF3A1-201ENST00000215793 NFATC2IPQ8NCF5 419 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 MCM9Q9NXL9 1143 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 FBF1Q8TES7 1133 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 GOLGA1Q92805 767 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 SPDYE4A6NLX3 237 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 MCM6Q14566 821 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 PLCH2O75038 1416 aa15.36■□□□□ 0.05
SF3A1-201ENST00000215793 PIK3C2GO75747 1445 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms