RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CD99P14209 185 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CD1BP29016 333 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RFX2P48378 723 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SNU13P55769 128 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 GPR17Q13304 367 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PRSS53Q2L4Q9 553 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TMEM119Q4V9L6 283 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PPM1JQ5JR12 505 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF841Q6ZN19 808 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MDGA2Q7Z553 956 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GPR26Q8NDV2 337 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF516Q92618 1163 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 DVL3Q92997 716 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 RPEQ96AT9 228 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ARRDC3Q96B67 414 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RBM14Q96PK6 669 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 CIB3Q96Q77 187 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 ONECUT1Q9UBC0 465 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 UBIAD1Q9Y5Z9 338 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ETV7Q9Y603 341 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 A3GALT2U3KPV4 340 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TCF20Q9UGU0 1960 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 DDX60Q8IY21 1712 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 KIR2DS1A0A191URI9 304 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MLNRO43193 412 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 FPR3P25089 353 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 S100A11P31949 105 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 BTCP35070 178 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 VIPR2P41587 438 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 KIR2DS4P43632 304 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ELLP55199 621 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 SIGLEC14Q08ET2 396 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 KIR2DS1Q14954 304 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LTB4RQ15722 352 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF626Q68DY1 528 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OSTM1Q86WC4 334 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR4F17Q8NGA8 305 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR10J6PQ8NGY7 276 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 FAM110BQ8TC76 370 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RMI2Q96E14 147 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MRPS24Q96EL2 167 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 RAX2Q96IS3 184 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LMF1Q96S06 567 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 INPP5EQ9NRR6 644 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 FBXW11Q9UKB1 542 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ATG2AQ2TAZ0 1938 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TRAV38-1A0A0B4J264 116 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 BMPR1BO00238 502 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 EFSO43281 561 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 HPXP02790 462 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GLRA1P23415 457 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CD1CP29017 333 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PIGPP57054 158 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SNRPD3P62318 126 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF141Q15928 474 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 DPPA4Q7L190 304 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GATSQ8NAP1 163 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR2G3Q8NGZ4 309 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 VN1R17PQ8TDU5 208 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ACPTQ9BZG2 426 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 NXF2Q9GZY0 626 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 APOBEC3GQ9HC16 384 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 AK3Q9UIJ7 227 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ELOA3CA0A087WX78 387 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 SERTM2A0A1B0GWG4 89 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RBMY1BA6NDE4 496 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 RBMY1EA6NEQ0 496 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 TLCD2A6NGC4 264 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CACNG3O60359 315 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RBMY1DP0C7P1 496 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 RBMY1A1P0DJD3 496 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 RBMY1CP0DJD4 496 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ITGAMP11215 1152 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MPLP40238 635 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 UCP2P55851 309 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 WNT3AP56704 352 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CACNG7P62955 275 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GPR50Q13585 617 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 APOFQ13790 326 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 HIST3H3Q16695 136 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 UNC50Q53HI1 259 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ASTLQ6HA08 431 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 TMEM88Q6PEY1 159 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LILRA6Q6PI73 481 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF788Q6ZQV5 615 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TCTEX1D1Q8N7M0 179 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RAB24Q969Q5 203 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SLC25A18Q9H1K4 315 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 C20orf85Q9H1P6 137 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 DLL4Q9NR61 685 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GNG12Q9UBI6 72 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 HSPB8Q9UJY1 196 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ITGB4P16144 1822 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 BTAF1O14981 1849 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 LNP1A1A4G5 178 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 FABP2P12104 132 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 NUMBP49757 651 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TAS2R60P59551 318 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ARF6P62330 175 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 HIST1H3AP68431 136 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms