RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ABHD12BQ7Z5M8 362 aaPredicted RBP17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 COMMD2Q86X83 199 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 NOXO1Q8NFA2 376 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 RRNAD1Q96FB5 475 aaKnown RBP17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 ZC3H10Q96K80 434 aaKnown RBP17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 OCSTAMPQ9BR26 566 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 NUDT22Q9BRQ3 303 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 ATPIF1Q9UII2 106 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 FLVCR1Q9Y5Y0 555 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 FER1L5A0AVI2 2057 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 EXPH5Q8NEV8 1989 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 H0YIZ8 118 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 ACTL6AO96019 429 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 HOXB1P14653 301 aaPredicted RBP17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 FPR2P25090 351 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 CBX5P45973 191 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 CSNK1EP49674 416 aaKnown RBP17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 RAB13P51153 203 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 PRSS54Q6PEW0 395 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 RNF144BQ7Z419 303 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 PEG10Q86TG7 708 aaKnown RBP17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 UEVLDQ8IX04 471 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 OR56B1Q8NGI3 324 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 NUBPLQ8TB37 319 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 ZNF501Q96CX3 271 aaPredicted RBP17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 MRGPRX4Q96LA9 322 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 TGIF2Q9GZN2 237 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 CHRDQ9H2X0 955 aa17.8■□□□□ 0.44
SYNGAP1-227ENST00000638142 PHF3Q92576 2039 aaKnown RBP17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 IGHG1P01857 330 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 RFC3P40938 356 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 RPL35P42766 123 aaKnown RBP17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 OR3A4PP47883 348 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 NPY4RP50391 375 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 AKR1C2P52895 323 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 AKR1C1Q04828 323 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 DRAM2Q6UX65 266 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 CLEC18BQ6UXF7 455 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 ADPRHL1Q8NDY3 354 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 OR8B12Q8NGG6 310 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 SEC61A2Q9H9S3 476 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 MMP26Q9NRE1 261 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 FGF21Q9NSA1 209 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 ATXN7L1Q9ULK2 861 aaPredicted RBP17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 TNRC18O15417 2968 aaPredicted RBP17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 F8W036 122 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 PGA4P0DJD7 388 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 PGA3P0DJD8 388 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 ZNF41P51814 821 aaPredicted RBP17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 AKR1D1P51857 326 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 TMEM50BP56557 158 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 BLOC1S1P78537 153 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 MYBPHQ13203 477 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 SLC25A53Q5H9E4 307 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 TMEM71Q6P5X7 295 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 TMPPEQ6ZT21 453 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 OR5H2Q8NGV7 314 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 THAP3Q8WTV1 239 aaPredicted RBP17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 RNF138Q8WVD3 245 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 TMED6Q8WW62 240 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 URM1Q9BTM9 101 aaKnown RBP17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 GPR84Q9NQS5 396 aa17.79■□□□□ 0.44
SYNGAP1-227ENST00000638142 PQLC2LA1A4F0 135 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 SHISA8B8ZZ34 492 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 MFNGO00587 321 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 CCL1P22362 96 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 MSX1P28360 303 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 SLC6A9P48067 706 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 GABREP78334 506 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 KMT5CQ86Y97 462 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 CBLN2Q8IUK8 224 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 NFAM1Q8NET5 270 aaPredicted RBP17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 STT3BQ8TCJ2 826 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 CNTNAP3BQ96NU0 1288 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 IFT22Q9H7X7 185 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 BIN3Q9NQY0 253 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 SDHAF3Q9NRP4 125 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 EFNA2O43921 213 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 HCKP08631 526 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 ZNF121P58317 390 aaPredicted RBP17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 NXPH1P58417 271 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 ZNF528Q3MIS6 628 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 IL34Q6ZMJ4 242 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 AQP10Q96PS8 301 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 C12orf57Q99622 126 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 BANF2Q9H503 90 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 SLC22A11Q9NSA0 550 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 COA4Q9NYJ1 87 aa17.78■□□□□ 0.44
SYNGAP1-227ENST00000638142 RAD51DO75771 328 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 SNAPINO95295 136 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 FOXL2P58012 376 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 SLC9A3R2Q15599 337 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 Q7L0L9 218 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 ANKRD37Q7Z713 158 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 LHFPL1Q86WI0 220 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 ADAT1Q9BUB4 502 aaKnown RBP17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 KLRF1Q9NZS2 232 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 PPP4R1LQ9P1A2 415 aa17.77■□□□□ 0.44
SYNGAP1-227ENST00000638142 ADAP1O75689 374 aa17.77■□□□□ 0.43
SYNGAP1-227ENST00000638142 FAM157CP0CG43 387 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms