RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SLC15A1P46059 708 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 SLC25A1P53007 311 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 GRB2P62993 217 aaKnown RBP15.29■□□□□ 0.04
CLN3-241ENST00000635861 PDCD1Q15116 288 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 RCN1Q15293 331 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 TAF13Q15543 124 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 OR8B8Q15620 311 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 OCLNQ16625 522 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 ZNF770Q6IQ21 691 aaPredicted RBP15.29■□□□□ 0.04
CLN3-241ENST00000635861 SLC37A3Q8NCC5 494 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 OR4F5Q8NH21 305 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 OR2AE1Q8NHA4 323 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 GATAD2BQ8WXI9 593 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 SLAMF6Q96DU3 332 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 DMRTB1Q96MA1 342 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 ZNF184Q99676 751 aaPredicted RBP15.29■□□□□ 0.04
CLN3-241ENST00000635861 MUC13Q9H3R2 512 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 TOR3AQ9H497 397 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 ACTR3BQ9P1U1 418 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 KAAG1Q9UBP8 84 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 CTSZQ9UBR2 303 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 POMPQ9Y244 141 aa15.29■□□□□ 0.04
CLN3-241ENST00000635861 TVP23AA6NH52 213 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 ADAM20O43506 726 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 TOX4O94842 621 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 CRYBA1P05813 215 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 MMP9P14780 707 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 MDKP21741 143 aaPredicted RBP15.28■□□□□ 0.04
CLN3-241ENST00000635861 GRK5P34947 590 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 RPS27P42677 84 aaKnown RBP15.28■□□□□ 0.04
CLN3-241ENST00000635861 ACTR3P61158 418 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 DBPQ10586 325 aaPredicted RBP15.28■□□□□ 0.04
CLN3-241ENST00000635861 METTL11BQ5VVY1 283 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 TEX36Q5VZQ5 186 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 TREML4Q6UXN2 200 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 RHOUQ7L0Q8 258 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 C19orf18Q8NEA5 215 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 OR9Q2Q8NGE9 314 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 CCDC124Q96CT7 223 aaKnown RBP15.28■□□□□ 0.04
CLN3-241ENST00000635861 WDFY2Q96P53 400 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 PCGF1Q9BSM1 259 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 NMNAT2Q9BZQ4 307 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 BEX1Q9HBH7 125 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 TBC1D23Q9NUY8 699 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 C1orf123Q9NWV4 160 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 NDUFA13Q9P0J0 144 aa15.28■□□□□ 0.04
CLN3-241ENST00000635861 MDFIC2A0A1B0GVS7 189 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 ANKRD30BLA7E2S9 258 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 TIPRLO75663 272 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 CCNB2O95067 398 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 NDUFA7O95182 113 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 LHBP01229 141 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 SPARCP09486 303 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 CFL1P23528 166 aaKnown RBP15.27■□□□□ 0.04
CLN3-241ENST00000635861 SFRP4Q6FHJ7 346 aaPredicted RBP15.27■□□□□ 0.04
CLN3-241ENST00000635861 GCSAMQ8N6F7 178 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 OR2T33Q8NG76 320 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 OR56B2PQ8NGI1 322 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 OR8D4Q8NGM9 314 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 MAGIXQ9H6Y5 334 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 SOX21Q9Y651 276 aaPredicted RBP15.27■□□□□ 0.04
CLN3-241ENST00000635861 VWFP04275 2813 aa15.27■□□□□ 0.04
CLN3-241ENST00000635861 FAM181BA6NEQ2 426 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 A6NLC8 198 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 C3orf80F5H4A9 247 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 ZNF593O00488 134 aaPredicted RBP15.26■□□□□ 0.03
CLN3-241ENST00000635861 GASTP01350 101 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 IFNGP01579 166 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 MUC1P15941 1255 aaPredicted RBP15.26■□□□□ 0.03
CLN3-241ENST00000635861 PRKXP51817 358 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 GK3PQ14409 553 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 LCN8Q6JVE9 175 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 OR9Q1Q8NGQ5 310 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 TBC1D15Q8TC07 691 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 SSMEM1Q8WWF3 244 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 ZNRF4Q8WWF5 429 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 TBX15Q96SF7 602 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 TSSK6Q9BXA6 273 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 DGCR6LQ9BY27 220 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 SIRPDQ9H106 197 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 Q9H521 79 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 CENPMQ9NSP4 180 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 ACOXLQ9NUZ1 547 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 NKX1-2Q9UD57 310 aaPredicted RBP15.26■□□□□ 0.03
CLN3-241ENST00000635861 TGP01266 2768 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 WNK1Q9H4A3 2382 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 CENPVL3A0A0U1RRI6 287 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 KNG1P01042 644 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 GRPP07492 148 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 MELTFP08582 738 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 SPI1P17947 270 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 ATP6V1B2P21281 511 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 RAG2P55895 527 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 CRMP1Q14194 572 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 C1orf146Q5VVC0 180 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 DHFR2Q86XF0 187 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 FAM90A1Q86YD7 464 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 BOLLQ8N9W6 283 aaKnown RBP15.26■□□□□ 0.03
CLN3-241ENST00000635861 AQP11Q8NBQ7 271 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 OR52H1Q8NGJ2 320 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms