RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FZR1Q9UM11 496 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 ABCA4P78363 2273 aa12.3□□□□□ -0.44
UPF1-211ENST00000600868 TRBV5-5A0A0J9YX44 114 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 IQCF6A8MYZ5 107 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 SC5DO75845 299 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 SERPINA3P01011 423 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 ACKR3P25106 362 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 RPS25P62851 125 aaKnown RBP12.29□□□□□ -0.44
UPF1-211ENST00000600868 RIPPLY1Q0D2K3 151 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 EFNB3Q15768 340 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 MOGQ16653 247 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 Q499Y3 187 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 TMEM255AQ5JRV8 349 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 OR2T2Q6IF00 324 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 KRT74Q7RTS7 529 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 LRP11Q86VZ4 500 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 SEMA6DQ8NFY4 1073 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 OR56B2PQ8NGI1 322 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 OR13F1Q8NGS4 319 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 OR13C3Q8NGS6 347 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 THRSPQ92748 146 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 FBXW5Q969U6 566 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 C10orf35Q96D05 121 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 PLK3Q9H4B4 646 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 ZNF275Q9NSD4 429 aaPredicted RBP12.29□□□□□ -0.44
UPF1-211ENST00000600868 DUSP13Q9UII6 198 aa12.29□□□□□ -0.44
UPF1-211ENST00000600868 B9A039 149 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 H3BSH0 61 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 HLA-DPB1P04440 258 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 OCM2P0CE71 109 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 CD36P16671 472 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 GALP22466 123 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 TTKP33981 857 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 TGFBR2P37173 567 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 PRSS12P56730 875 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 CD200R1LQ6Q8B3 271 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 UNQ9370/PRO34162Q6UXP9 181 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 FBXL14Q8N1E6 418 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 FTMTQ8N4E7 242 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 OR13C5Q8NGS8 318 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 TSEN15Q8WW01 171 aaKnown RBP12.28□□□□□ -0.44
UPF1-211ENST00000600868 TMEM203Q969S6 136 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 TMIGD2Q96BF3 282 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 YIPF6Q96EC8 236 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 SYT3Q9BQG1 590 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 CLEC4MQ9H2X3 399 aaPredicted RBP12.28□□□□□ -0.44
UPF1-211ENST00000600868 FAIMQ9NVQ4 179 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 MRPL15Q9P015 296 aaKnown RBP12.28□□□□□ -0.44
UPF1-211ENST00000600868 CGGBP1Q9UFW8 167 aaPredicted RBP12.28□□□□□ -0.44
UPF1-211ENST00000600868 DHDHQ9UQ10 334 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 PIGLQ9Y2B2 252 aa12.28□□□□□ -0.44
UPF1-211ENST00000600868 ZNF816-ZNF321PA0A0X1KG74 233 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 TRDV1A0A1B0GX56 115 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 ZNF879B4DU55 563 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 TIMM8AO60220 97 aaPredicted RBP12.27□□□□□ -0.45
UPF1-211ENST00000600868 GATBO75879 557 aaKnown RBP12.27□□□□□ -0.45
UPF1-211ENST00000600868 RGS9O75916 674 aaPredicted RBP12.27□□□□□ -0.45
UPF1-211ENST00000600868 CST4P01036 141 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 CD2P06729 351 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 MAPK3P27361 379 aaPredicted RBP12.27□□□□□ -0.45
UPF1-211ENST00000600868 SSTR2P30874 369 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 CRYBB2P43320 205 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 MST1LQ2TV78 715 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 ALKBH6Q3KRA9 238 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 ACSM3Q53FZ2 586 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 TMEM42Q69YG0 159 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 TMEM91Q6ZNR0 172 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 GPR141Q7Z602 305 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 MUC15Q8N387 334 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 PARP16Q8N5Y8 322 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 ZNF611Q8N823 705 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 OR8G5Q8NG78 346 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 PHYHIPQ92561 330 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 PIGTQ969N2 578 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 PLEKHF2Q9H8W4 249 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 PLEKHA1Q9HB21 404 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 CYSLTR2Q9NS75 346 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 TAAR3PQ9P1P4 343 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 MYEF2Q9P2K5 600 aaKnown RBP12.27□□□□□ -0.45
UPF1-211ENST00000600868 GPR160Q9UJ42 338 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 ENPP5Q9UJA9 477 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 ROS1P08922 2347 aa12.27□□□□□ -0.45
UPF1-211ENST00000600868 HRNRQ86YZ3 2850 aaPredicted RBP12.26□□□□□ -0.45
UPF1-211ENST00000600868 TRBV5-7A0A0A0MS05 114 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 A0A1B0GWJ7 208 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 ANKRD30BLA7E2S9 258 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 LMX1BO60663 402 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 LILRA1O75019 489 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 RAF1P04049 648 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 DANCRP0C864 163 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 FAHP16930 419 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 MAGEB1P43366 347 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 SOX2P48431 317 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 FABP5Q01469 135 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 SWI5Q1ZZU3 235 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 TIMM50Q3ZCQ8 353 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 ZMAT1Q5H9K5 638 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 AGAP6Q5VW22 663 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 PAMR1Q6UXH9 720 aa12.26□□□□□ -0.45
UPF1-211ENST00000600868 DTX2Q86UW9 622 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms