RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CLDN14O95500 239 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 RAF1P04049 648 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 MPV17P39210 176 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 OR13C9Q8NGT0 318 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 PHYHIPQ92561 330 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 SLIRPQ9GZT3 109 aaKnown RBP21.59■■□□□ 1.05
SHMT1-207ENST00000580002 TCF7L1Q9HCS4 588 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 CD2P06729 351 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 PGAP1Q75T13 922 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 SEMA6DQ8NFY4 1073 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 OR56B2PQ8NGI1 322 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 AKAP1Q92667 903 aaKnown RBP eCLIP21.59■■□□□ 1.05
SHMT1-207ENST00000580002 SLC25A46Q96AG3 418 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 CMBLQ96DG6 245 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 PLEKHB1Q9UF11 243 aaPredicted RBP21.59■■□□□ 1.05
SHMT1-207ENST00000580002 MYO18BQ8IUG5 2567 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 C19orf84I3L1E1 186 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 SLC2A2P11168 524 aaPredicted RBP21.58■■□□□ 1.04
SHMT1-207ENST00000580002 ZNF20P17024 532 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 DDOSTP39656 456 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 MALLQ13021 153 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 OR8B8Q15620 311 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 OR2T2Q6IF00 324 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 XKRXQ6PP77 449 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 MRPL21Q7Z2W9 205 aaKnown RBP21.58■■□□□ 1.04
SHMT1-207ENST00000580002 SERPINA12Q8IW75 414 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 BHLHE23Q8NDY6 225 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 RADILQ96JH8 1075 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 USB1Q9BQ65 265 aaKnown RBP21.58■■□□□ 1.04
SHMT1-207ENST00000580002 RGCCQ9H4X1 137 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 RHBDD3Q9Y3P4 386 aa21.58■■□□□ 1.04
SHMT1-207ENST00000580002 USP9XQ93008 2570 aaPredicted RBP21.57■■□□□ 1.04
SHMT1-207ENST00000580002 IGKV1-9A0A0C4DH69 117 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 LOC390937A0A1W2PQ73 354 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 RAB3BP20337 219 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 BSPH1Q075Z2 132 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 UBE2V2Q15819 145 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 C3orf36Q3SXR2 165 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 ZNF808Q8N4W9 903 aaPredicted RBP21.57■■□□□ 1.04
SHMT1-207ENST00000580002 PLEKHA1Q9HB21 404 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 GPR173Q9NS66 373 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 PTTG2Q9NZH5 202 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 HCFC1P51610 2035 aa21.57■■□□□ 1.04
SHMT1-207ENST00000580002 A0A0B4J203 849 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 MTRF1O75570 445 aaKnown RBP21.56■■□□□ 1.04
SHMT1-207ENST00000580002 OR5AS1Q8N127 324 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 PIAS4Q8N2W9 510 aaPredicted RBP21.56■■□□□ 1.04
SHMT1-207ENST00000580002 NPRL2Q8WTW4 380 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 MARS2Q96GW9 593 aaKnown RBP21.56■■□□□ 1.04
SHMT1-207ENST00000580002 SPACA5Q96QH8 159 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 SIAH2O43255 324 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 CRYAAP02489 173 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 PPP3CBP16298 524 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 MAP2K3P46734 347 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 SRSF1Q07955 248 aaKnown RBP eCLIP21.56■■□□□ 1.04
SHMT1-207ENST00000580002 RIPPLY1Q0D2K3 151 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 ZNF529Q6P280 563 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 OR1M1Q8NGA1 313 aa21.56■■□□□ 1.04
SHMT1-207ENST00000580002 GGT3PA6NGU5 568 aa21.55■■□□□ 1.04
SHMT1-207ENST00000580002 FSTP19883 344 aa21.55■■□□□ 1.04
SHMT1-207ENST00000580002 FABP6P51161 128 aa21.55■■□□□ 1.04
SHMT1-207ENST00000580002 VHLLQ6RSH7 139 aa21.55■■□□□ 1.04
SHMT1-207ENST00000580002 OR5L1Q8NGL2 311 aa21.55■■□□□ 1.04
SHMT1-207ENST00000580002 KLF14Q8TD94 323 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-207ENST00000580002 DVL3Q92997 716 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-207ENST00000580002 ZCCHC4Q9H5U6 513 aa21.55■■□□□ 1.04
SHMT1-207ENST00000580002 CGGBP1Q9UFW8 167 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-207ENST00000580002 FOXJ3Q9UPW0 622 aa21.55■■□□□ 1.04
SHMT1-207ENST00000580002 ROS1P08922 2347 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 CD300LBA8K4G0 201 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 ABCD4O14678 606 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 AGAP20933 346 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 RAD52P43351 418 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 RORCP51449 518 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 PSG7Q13046 419 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 SNTB2Q13425 540 aaKnown RBP21.54■■□□□ 1.04
SHMT1-207ENST00000580002 LRP11Q86VZ4 500 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 TPRA1Q86W33 373 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 OR52N4Q8NGI2 321 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 OR5D14Q8NGL3 314 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 PIGCQ92535 297 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 ZNF391Q9UJN7 358 aa21.54■■□□□ 1.04
SHMT1-207ENST00000580002 TUBAL3A6NHL2 446 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 ZNF12P17014 697 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 ATF1P18846 271 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 THBS4P35443 961 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 NKX6-1P78426 367 aaPredicted RBP21.53■■□□□ 1.04
SHMT1-207ENST00000580002 DGUOKQ16854 277 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 HES5Q5TA89 166 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 TMEM108Q6UXF1 575 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 FBXW12Q6X9E4 464 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 MOV10Q9HCE1 1003 aaKnown RBP21.53■■□□□ 1.04
SHMT1-207ENST00000580002 CCDC59Q9P031 241 aaKnown RBP21.53■■□□□ 1.04
SHMT1-207ENST00000580002 NDRG3Q9UGV2 375 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 DAPK2Q9UIK4 370 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 GPR160Q9UJ42 338 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 ANKHD1Q8IWZ3 2542 aaKnown RBP21.53■■□□□ 1.04
SHMT1-207ENST00000580002 GMDSO60547 372 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 CLDN12P56749 244 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 SORDQ00796 357 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms