RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SPAG16Q8N0X2 631 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 PUSL1Q8N0Z8 303 aaKnown RBP4.57□□□□□ -1.68
VPS53-219ENST00000576019 DNAAF3Q8N9W5 541 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 LMO3Q8TAP4 145 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 CXorf40AQ8TE69 158 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 C2orf15Q8WU43 125 aaKnown RBP4.57□□□□□ -1.68
VPS53-219ENST00000576019 GTF2H4Q92759 462 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 ZNF514Q96K75 400 aaPredicted RBP4.57□□□□□ -1.68
VPS53-219ENST00000576019 POM121L2Q96KW2 1035 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 SH3GL1Q99961 368 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 KLHDC3Q9BQ90 382 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 UTP23Q9BRU9 249 aaKnown RBP4.57□□□□□ -1.68
VPS53-219ENST00000576019 CNPY3Q9BT09 278 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 ING2Q9H160 280 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 PATZ1Q9HBE1 687 aaKnown RBP4.57□□□□□ -1.68
VPS53-219ENST00000576019 TIGARQ9NQ88 270 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 PLCXD1Q9NUJ7 323 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 GIN1Q9NXP7 522 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 SPRR3Q9UBC9 169 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 NXT1Q9UKK6 140 aaKnown RBP4.57□□□□□ -1.68
VPS53-219ENST00000576019 SPATA2Q9UM82 520 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 PLLPQ9Y342 182 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 TNFRSF18Q9Y5U5 241 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 V9GYY9 64 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 SMIM28A0A1B0GU29 152 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 A0A1W2PRF3 423 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 A0A1W2PRM7 423 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 PSMB11A5LHX3 300 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 PMS2P5A8MQ11 134 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 FOXI3A8MTJ6 420 aaPredicted RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 G3V3Y1 287 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 TOR1AO14656 332 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 AQP9O43315 295 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 CYTH3O43739 400 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 SNAP91O60641 907 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 MPDU1O75352 247 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 CLDN11O75508 207 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 BGNP21810 368 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 ADORA2BP29275 332 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 CHRNB4P30926 498 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 UGT2B10P36537 528 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 RFC3P40938 356 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 RPL29P47914 159 aaKnown RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 SSR4P51571 173 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 RIDAP52758 137 aaKnown RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 BLVRAP53004 296 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 ATP12AP54707 1039 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 UBE2KP61086 200 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 SLC10A7Q0GE19 358 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 FHL1Q13642 323 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 GGTLC2Q14390 218 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 C17orf58Q2M2W7 97 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 VAX1Q5SQQ9 334 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 TPRG1LQ5T0D9 272 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 ADAMTSL4-AS1Q5T5F5 129 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 PTRHD1Q6GMV3 140 aaKnown RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 ARMCX5Q6P1M9 558 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 SPSB3Q6PJ21 355 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 BHLHA15Q7RTS1 189 aaPredicted RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 BHLHA9Q7RTU4 235 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 OR2W3Q7Z3T1 314 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 PLA2G4DQ86XP0 818 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 NRMQ8IXM6 262 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 KIF2BQ8N4N8 673 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 CCDC112Q8NEF3 446 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 NOXO1Q8NFA2 376 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 OR51F2Q8NH61 342 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 SPPL2BQ8TCT7 592 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 NTN5Q8WTR8 489 aaPredicted RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 PAGE5Q96GU1 130 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 GMPPAQ96IJ6 420 aaPredicted RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 NOL4LQ96MY1 436 aaPredicted RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 SORCS2Q96PQ0 1159 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 BEX2Q9BXY8 128 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 PARLQ9H300 379 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 FBXL12Q9NXK8 326 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 DCDC2Q9UHG0 476 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 UBQLN1Q9UMX0 589 aaKnown RBP4.56□□□□□ -1.68
VPS53-219ENST00000576019 ING4Q9UNL4 249 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 BTRCQ9Y297 605 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 CBY1Q9Y3M2 126 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 HCFC1P51610 2035 aa4.56□□□□□ -1.68
VPS53-219ENST00000576019 IGKV1D-8A0A087WSZ0 117 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 GLYATL1P3A0A0U1RQE8 302 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 RBMY1BA6NDE4 496 aaKnown RBP4.55□□□□□ -1.68
VPS53-219ENST00000576019 RBMY1EA6NEQ0 496 aaKnown RBP4.55□□□□□ -1.68
VPS53-219ENST00000576019 USP27XA6NNY8 438 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 E7EWF7 191 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 PLEKHA8P1O95397 391 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 DUS4LO95620 317 aaKnown RBP4.55□□□□□ -1.68
VPS53-219ENST00000576019 HBE1P02100 147 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 RBMY1DP0C7P1 496 aaKnown RBP4.55□□□□□ -1.68
VPS53-219ENST00000576019 RD3LP0DJH9 198 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 CT45A10P0DMU9 189 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 ATP6V1B2P21281 511 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 IVDP26440 423 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 AQP2P41181 271 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 GDF5P43026 501 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 TFPI2P48307 235 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 GSK3BP49841 420 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms