RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TNFRSF1AP19438 455 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 GSTM3P21266 225 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SDHAP31040 664 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 RPL4P36578 427 aaKnown RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 MDH2P40926 338 aaKnown RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 GSK3BP49841 420 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ETV1P50549 477 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SLC7A2P52569 658 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 RAD23AP54725 363 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 P2RX3P56373 397 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 CSNK2BP67870 215 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 CTAG1AP78358 180 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 FOXL1Q12952 345 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 BAMBIQ13145 260 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 MAB21L1Q13394 359 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SLC9A3R2Q15599 337 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 RFX4Q33E94 735 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SLC36A3Q495N2 470 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 CDONQ4KMG0 1287 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 IFI44LQ53G44 452 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ZMAT1Q5H9K5 638 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ARMCX4Q5H9R4 360 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 C1orf94Q6P1W5 598 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 LEG1Q6P5S2 330 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 CORO6Q6QEF8 472 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 LYPD2Q6UXB3 125 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ZNF730Q6ZMV8 503 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ZNF841Q6ZN19 808 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 PRSS48Q7RTY5 328 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ZER1Q7Z7L7 766 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 NAA40Q86UY6 237 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 KLBQ86Z14 1044 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 KLHL36Q8N4N3 616 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 FAM86B1Q8N7N1 296 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SETD9Q8NE22 299 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 OR8G5Q8NG78 346 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 UPRTQ96BW1 309 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 SLC30A2Q9BRI3 323 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 TMEM246Q9BRR3 403 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 PRDM13Q9H4Q3 707 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ANKRD19PQ9H560 264 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 WDR76Q9H967 626 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 PNRC2Q9NPJ4 139 aaKnown RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 C12orf4Q9NQ89 552 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 RPRD1BQ9NQG5 326 aaKnown RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 PAK1IP1Q9NWT1 392 aaPredicted RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 PTTG3PQ9NZH4 202 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ADA2Q9NZK5 511 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 CCDC59Q9P031 241 aaKnown RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 NDUFAF4Q9P032 175 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 KIF17Q9P2E2 1029 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ABCD2Q9UBJ2 740 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 GRHPRQ9UBQ7 328 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 WARS2Q9UGM6 360 aaKnown RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 ENPP5Q9UJA9 477 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 TMA7Q9Y2S6 64 aaKnown RBP5.61□□□□□ -1.51
VPS53-213ENST00000572334 ORC6Q9Y5N6 252 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 IER3IP1Q9Y5U9 82 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 ENPP4Q9Y6X5 453 aa5.61□□□□□ -1.51
VPS53-213ENST00000572334 IGHV2-70DA0A0C4DH43 119 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 IGHV3-64DA0A0J9YX35 117 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 LOC105371267A0A1B0GV96 52 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 A0A1W2PRQ8 180 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 TCRBV3S1A0A5B6 114 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 C5orf63A6NC05 138 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 F5H5P2 479 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 J3QW42 95 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 TNFRSF13BO14836 293 aaPredicted RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 KHDRBS3O75525 346 aaKnown RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 UPK1BO75841 260 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 DIRAS1O95057 198 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 PPP1R3DO95685 299 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 SEMG1P04279 462 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 HLA-DPB1P04440 258 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 ACSM4P0C7M7 580 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 C4BPBP20851 252 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 TNFSF4P23510 183 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 ERP29P30040 261 aaKnown RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 GUCA1AP43080 201 aaPredicted RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 GATA4P43694 442 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 COX10Q12887 443 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 DGCR6Q14129 220 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 ZNF404Q494X3 552 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 FGD3Q5JSP0 725 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 CLEC12AQ5QGZ9 265 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 GPR139Q6DWJ6 353 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 SLC18B1Q6NT16 456 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 ARL9Q6T311 187 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 SHISA2Q6UWI4 295 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 DPY19L2P2Q6ZN68 376 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 CFAP77Q6ZQR2 320 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 MOGAT3Q86VF5 341 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 GLB1L2Q8IW92 636 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 C8orf59Q8N0T1 100 aaPredicted RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 OR6V1Q8N148 313 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 STX19Q8N4C7 294 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 C19orf18Q8NEA5 215 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 SLC26A10Q8NG04 563 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 OR10S1Q8NGN2 331 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 ZNRF4Q8WWF5 429 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms