RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 AHSA1O95433 338 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 NR0B1P51843 470 aaKnown RBP11.76□□□□□ -0.53
VPS4A-204ENST00000566354 RAP1BP61224 184 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 RAP1AP62834 184 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 PPIAP62937 165 aaKnown RBP11.76□□□□□ -0.53
VPS4A-204ENST00000566354 PCK2Q16822 640 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 GRINAQ7Z429 371 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 TRAPPC6BQ86SZ2 158 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 SLC26A10Q8NG04 563 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 NPAS1Q99742 590 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 CST11Q9H112 138 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 SAV1Q9H4B6 383 aaPredicted RBP11.76□□□□□ -0.53
VPS4A-204ENST00000566354 BIN3Q9NQY0 253 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 RHBDD3Q9Y3P4 386 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 A6NJY4 79 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 SMAD9O15198 467 aaKnown RBP11.76□□□□□ -0.53
VPS4A-204ENST00000566354 STK17BO94768 372 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 PLATP00750 562 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 CASRP41180 1078 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 PNLIPRP2P54317 469 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 SLC26A5P58743 744 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 SPCS3P61009 180 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 PLCXD2Q0VAA5 305 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 INPP5JQ15735 1006 aaPredicted RBP11.76□□□□□ -0.53
VPS4A-204ENST00000566354 BEX5Q5H9J7 111 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 PABPC1L2AQ5JQF8 200 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 DNM1P34Q6PK57 102 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 COX15Q7KZN9 410 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 DCXRQ7Z4W1 244 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 GPR119Q8TDV5 335 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 ST7LQ8TDW4 575 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 NKD1Q969G9 470 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 FAM46BQ96A09 425 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 CDC6Q99741 560 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 OR51M1Q9H341 326 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 F5H0A9 414 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 SCGNO76038 276 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 LIPCP11150 499 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 FGF5P12034 268 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 BDKRB2P30411 391 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 EIF2S3P41091 472 aaKnown RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 COTL1Q14019 142 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 IL11RAQ14626 422 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 ATXN7L3Q14CW9 347 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 EIF2S3LQ2VIR3 472 aaKnown RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 ZNF813Q6ZN06 617 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 SHISA6Q6ZSJ9 500 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 C9orf40Q8IXQ3 194 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 MRGPRFQ96AM1 343 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 NARS2Q96I59 477 aaKnown RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 CNTD2Q9H8S5 307 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 AKIRIN1Q9H9L7 192 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 GSN-AS1Q9NRJ2 163 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 NDRG3Q9UGV2 375 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 CPAMD8Q8IZJ3 1885 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 CEP250Q9BV73 2442 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 WIPF3A6NGB9 483 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 SULT2B1O00204 365 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 DUS4LO95620 317 aaKnown RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 FREM3P0C091 2139 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 TBPP20226 339 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 RAB4AP20338 218 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 HSD11B1P28845 292 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 MMP16P51512 607 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 NKAIN1Q4KMZ8 207 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 DHRS13Q6UX07 377 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 PIP4P1Q86T03 277 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 PAQR4Q8N4S7 273 aaPredicted RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 CHST4Q8NCG5 386 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 DAZLQ92904 295 aaKnown RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 OR11A1Q9GZK7 315 aa11.75□□□□□ -0.53
VPS4A-204ENST00000566354 PURGQ9UJV8 347 aaKnown RBP11.75□□□□□ -0.53
VPS4A-204ENST00000566354 LOC100509620A0A075B734 347 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 FAM74A7A6NL05 159 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 OR2AT4A6NND4 320 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 P2RY10O00398 339 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 EFSO43281 561 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 LMX1BO60663 402 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 ATG12O94817 140 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 BPNT1O95861 308 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 ERCC1P07992 297 aaPredicted RBP11.74□□□□□ -0.53
VPS4A-204ENST00000566354 ABCD3P28288 659 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 GSK3AP49840 483 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 TRIP6Q15654 476 aaKnown RBP11.74□□□□□ -0.53
VPS4A-204ENST00000566354 FAM74A3Q4VXF1 159 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 ZNF385CQ66K41 422 aaPredicted RBP11.74□□□□□ -0.53
VPS4A-204ENST00000566354 LCN10Q6JVE6 187 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 GVQW1Q8N7I0 195 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 FGGYQ96C11 551 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 WWTR1Q9GZV5 400 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 PCDHB10Q9UN67 800 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 FTCDNL1E5RQL4 147 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 SIGLEC5O15389 551 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 FADS1O60427 444 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 IFNA6P05013 189 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 H2BFMP0C1H6 154 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 HLA-DOBP13765 273 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 PCP4P48539 62 aa11.74□□□□□ -0.53
VPS4A-204ENST00000566354 P2RY4P51582 365 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms