RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 STMN2Q93045 179 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 FBXO17Q96EF6 278 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 CAPZA3Q96KX2 299 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 RHNO1Q9BSD3 238 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 KLK15Q9H2R5 256 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 TMEM38AQ9H6F2 299 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 ASCL3Q9NQ33 180 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 ELOVL5Q9NYP7 299 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 TMCO1Q9UM00 188 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 PPP1R3CQ9UQK1 317 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 AP3M1Q9Y2T2 418 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 COL4A3Q01955 1670 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 NCOR1O75376 2440 aa4.32□□□□□ -1.72
VPS35P1-201ENST00000563400 A8MX80 341 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 PEX11BO96011 259 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ORM1P02763 201 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 RPLP0P05388 317 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 HLA-DQB2P05538 268 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 LIPCP11150 499 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 WT1P19544 449 aaPredicted RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 MAKP20794 623 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ARR3P36575 388 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 IDH2P48735 452 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SPINT3P49223 89 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 OR10A3P58181 314 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 HILS1P60008 231 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 MAXP61244 160 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 NAA20P61599 178 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 PRKCDQ05655 676 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ARL16Q0P5N6 197 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF154Q13106 437 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 RAB31Q13636 194 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 GNMTQ14749 295 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 CCDC6Q16204 474 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SPANXN3Q5MJ09 141 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 RBM48Q5RL73 367 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SUMO4Q6EEV6 95 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 Q6ZSR6 202 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SSX7Q7RTT5 188 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 PTAR1Q7Z6K3 402 aaPredicted RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 IFNEQ86WN2 208 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 OOSP2Q86WS3 158 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 WDFY1Q8IWB7 410 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 Q8N1X5 172 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 NPWQ8N729 165 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ACOT4Q8N9L9 421 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 LFNGQ8NES3 379 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ATP6V1C2Q8NEY4 427 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 OR6K6Q8NGW6 343 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SFXN5Q8TD22 340 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 HPSE2Q8WWQ2 592 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SLC35B4Q969S0 331 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 TMEM159Q96B96 161 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 YIPF6Q96EC8 236 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SGTBQ96EQ0 304 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 CMTM7Q96FZ5 175 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF488Q96MN9 340 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 OR8B4Q96RC9 309 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 FOXC2Q99958 501 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SDHAF2Q9NX18 166 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 TFR2Q9UP52 801 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SNX24Q9Y343 169 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SNX10Q9Y5X0 201 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 HELZP42694 1942 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 NOTCH4Q99466 2003 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 RANBP2P49792 3224 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 IGLV5-52A0A0A0MRZ9 124 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 TRBV7-9A0A0J9YWB2 115 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 IGLON5A6NGN9 336 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 C11orf98E9PRG8 122 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 CCL21O00585 134 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 MAGEB4O15481 346 aaPredicted RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 UGT2B17O75795 530 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 PMS2P2O95744 297 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 TCRBP04435 133 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 WNT2P09544 360 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 TACSTD2P09758 323 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SLC2A2P11168 524 aaPredicted RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 CLDN12P56749 244 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 HERV-K104P61576 105 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 RPL31P62899 125 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 SLC10A2Q12908 348 aaPredicted RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 PTGR1Q14914 329 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 NFATC4Q14934 902 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 TRIP6Q15654 476 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 RFX4Q33E94 735 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 GCSAMLQ5JQS6 135 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF66Q6ZN08 573 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 FRRS1Q6ZNA5 592 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 MTURNQ8N3F0 131 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 MMGT1Q8N4V1 131 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 CCDC71LQ8N9Z2 235 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 WDR31Q8NA23 367 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 ZNF114Q8NC26 417 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 OR9A4Q8NGU2 314 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 OR2AE1Q8NHA4 323 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 WFDC5Q8TCV5 224 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 FAM222BQ8WU58 562 aa4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 TRUB1Q8WWH5 349 aaKnown RBP4.31□□□□□ -1.72
VPS35P1-201ENST00000563400 IFT81Q8WYA0 676 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms