RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 COLCA1Q6ZS62 124 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 DOK3Q7L591 496 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 CCDC190Q86UF4 302 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 NOXA1Q86UR1 476 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 TPRA1Q86W33 373 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 SLC30A7Q8NEW0 376 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 SGK3Q96BR1 496 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 S100PBPQ96BU1 408 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 ST6GAL2Q96JF0 529 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 FAM71F1Q96KD3 344 aaPredicted RBP9.74□□□□□ -0.85
USP3-218ENST00000560202 SOX7Q9BT81 388 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 C1QTNF5Q9BXJ0 243 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 BARHL1Q9BZE3 327 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 ZNF275Q9NSD4 429 aaPredicted RBP9.74□□□□□ -0.85
USP3-218ENST00000560202 ELOVL5Q9NYP7 299 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 KCNN3Q9UGI6 736 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 AMDHD2Q9Y303 409 aa9.74□□□□□ -0.85
USP3-218ENST00000560202 ANKRD61A6NGH8 418 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 LMX1BO60663 402 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 IGKV3-15P01624 115 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 IDH3GP51553 393 aaPredicted RBP9.73□□□□□ -0.85
USP3-218ENST00000560202 CAV3P56539 151 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 HNRNPA0Q13151 305 aaKnown RBP9.73□□□□□ -0.85
USP3-218ENST00000560202 TIMM23BQ5SRD1 257 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 RFPL4BQ6ZWI9 263 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 SLC51BQ86UW2 128 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 PLPP7Q8NBV4 271 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 STEAP2Q8NFT2 490 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 LYZL4Q96KX0 146 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 C1QTNF6Q9BXI9 259 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 C6orf62Q9GZU0 229 aaPredicted RBP9.73□□□□□ -0.85
USP3-218ENST00000560202 SLITRK2Q9H156 845 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 TCF7L1Q9HCS4 588 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 SLC25A15Q9Y619 301 aa9.73□□□□□ -0.85
USP3-218ENST00000560202 ZGRF1Q86YA3 2104 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 SHANK1Q9Y566 2161 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 TRAV8-7A0A075B6U6 113 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 NCR1O76036 304 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 CELA3BP08861 270 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 IL7P13232 177 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 RAB3BP20337 219 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 TBC1D28Q2M2D7 210 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 GLYATL3Q5SZD4 288 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 MYPOPQ86VE0 399 aaPredicted RBP9.72□□□□□ -0.85
USP3-218ENST00000560202 FJX1Q86VR8 437 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 NR2C2APQ86WQ0 139 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 TCTE3Q8IZS6 198 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 PAQR4Q8N4S7 273 aaPredicted RBP9.72□□□□□ -0.85
USP3-218ENST00000560202 OR1J2Q8NGS2 313 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 OR14K1Q8NGZ2 314 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 APOBEC3DQ96AK3 386 aaPredicted RBP9.72□□□□□ -0.85
USP3-218ENST00000560202 FGGYQ96C11 551 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 SLC30A2Q9BRI3 323 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 ACTR6Q9GZN1 396 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 RGCCQ9H4X1 137 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 ZNF391Q9UJN7 358 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 NUP50Q9UKX7 468 aa9.72□□□□□ -0.85
USP3-218ENST00000560202 RP1L1Q8IWN7 2480 aaPredicted RBP9.71□□□□□ -0.85
USP3-218ENST00000560202 PDCD5O14737 125 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 XRCC2O43543 280 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 DHRS3O75911 302 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 TPPPO94811 219 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 SPNP16150 400 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 HLA-DMAP28067 261 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 CHRNB4P30926 498 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 OR10A3P58181 314 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 CEP78Q5JTW2 689 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 ASPHD2Q6ICH7 369 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 Q6ZSR3 168 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 FAM169BQ8N8A8 192 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 CCDC54Q8NEL0 328 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 OR2AE1Q8NHA4 323 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 ZFAND1Q8TCF1 268 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 MUCL1Q96DR8 90 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 ADAT3Q96EY9 351 aaPredicted RBP9.71□□□□□ -0.85
USP3-218ENST00000560202 REEP6Q96HR9 211 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 RNF170Q96K19 258 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 CEP19Q96LK0 163 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 USB1Q9BQ65 265 aaKnown RBP9.71□□□□□ -0.85
USP3-218ENST00000560202 TAS2R4Q9NYW5 299 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 COQ3Q9NZJ6 369 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 CKLFQ9UBR5 152 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 PLEKHB1Q9UF11 243 aaPredicted RBP9.71□□□□□ -0.85
USP3-218ENST00000560202 FOXJ3Q9UPW0 622 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 AK6Q9Y3D8 172 aaKnown RBP9.71□□□□□ -0.85
USP3-218ENST00000560202 V9GYS6 101 aa9.71□□□□□ -0.85
USP3-218ENST00000560202 INTS1Q8N201 2190 aaKnown RBP9.71□□□□□ -0.86
USP3-218ENST00000560202 A0A0G2JK05 382 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 A0A1B0GUH1 482 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 LOC390937A0A1W2PQ73 354 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 A6NIN4 97 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 C16orf97H3BN30 126 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 KALRNO60229 2985 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 MTRF1O75570 445 aaKnown RBP9.71□□□□□ -0.86
USP3-218ENST00000560202 NGFP01138 241 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 IGLV1-44P01699 117 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 IGFBP3P17936 291 aaPredicted RBP9.71□□□□□ -0.86
USP3-218ENST00000560202 FSTP19883 344 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 PRKACBP22694 351 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 WNT5AP41221 380 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms