RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 FAM166BA8MTA8 275 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 GOSR2O14653 212 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 CRTAPO75718 401 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 HPP00738 406 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 PLATP00750 562 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ITGA3P26006 1051 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 SRD5A2P31213 254 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 RAC3P60763 192 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 CHAF1BQ13112 559 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ATP1A1-AS1Q5TC04 95 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 SEZ6L2Q6UXD5 910 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ZNF584Q8IVC4 421 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 NAXDQ8IW45 347 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 FOXRED1Q96CU9 486 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 ELL3Q9HB65 397 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 GPN1Q9HCN4 374 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 FOXD3Q9UJU5 478 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 KCNK7Q9Y2U2 307 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 VAMP5O95183 116 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 SERPINA7P05543 415 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 POU3F2P20265 443 aaPredicted RBP9.32□□□□□ -0.92
CUX1-217ENST00000558836 UBE2V2Q15819 145 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 KCNMB1Q16558 191 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 C11orf88Q6PI97 169 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 OR8H3Q8N146 312 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 OR14K1Q8NGZ2 314 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 FGFBP3Q8TAT2 258 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 DCAF16Q9NXF7 216 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 PIGLQ9Y2B2 252 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 NBEAQ8NFP9 2946 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 GVINP1Q7Z2Y8 2422 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 M0R135 149 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 MPC2O95563 127 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 PMP2P02689 132 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 ZNF35P13682 527 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 HRH1P35367 487 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 PER3P56645 1201 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 LSM6P62312 80 aaKnown RBP9.32□□□□□ -0.92
CUX1-217ENST00000558836 GRB2P62993 217 aaKnown RBP9.32□□□□□ -0.92
CUX1-217ENST00000558836 CXADRP78310 365 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 HGFACQ04756 655 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 PLAC9Q5JTB6 97 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 C10orf128Q5T292 105 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 LIN54Q6MZP7 749 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 ZNF529Q6P280 563 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 FIP1L1Q6UN15 594 aaKnown RBP9.32□□□□□ -0.92
CUX1-217ENST00000558836 MAFIPQ8WZ33 124 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 AQP3Q92482 292 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 ZNF799Q96GE5 643 aa9.32□□□□□ -0.92
CUX1-217ENST00000558836 STMND1H3BQB6 276 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 CFDP00746 253 aaPredicted RBP9.31□□□□□ -0.92
CUX1-217ENST00000558836 IGHEP01854 428 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 ZNF735P0CB33 412 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 GRK1Q15835 563 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 TEX261Q6UWH6 196 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 DOK3Q7L591 496 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 AAED1Q7RTV5 226 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 C20orf196Q8IYI0 205 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 OR13C8Q8NGS7 320 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 NTNG2Q96CW9 530 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 C1orf147Q96MC9 270 aaPredicted RBP9.31□□□□□ -0.92
CUX1-217ENST00000558836 GPR137Q96N19 417 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 SPRY4Q9C004 299 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 LPAR5Q9H1C0 372 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 HEXA-AS1Q9H8Q6 139 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 NPTNQ9Y639 398 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 U3KQ87 197 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 TMEM82A0PJX8 343 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 UBE2QL1A1L167 161 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 ZNF716A6NP11 495 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 NEURL1O76050 574 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 BPNT1O95861 308 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 SERPINA2P20848 420 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 ZNF84P51523 738 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 CTAG1AP78358 180 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 FOXO1Q12778 655 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 TGIF1Q15583 401 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 KISS1Q15726 138 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 CDH24Q86UP0 819 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 TMEM229BQ8NBD8 167 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 ZNF680Q8NEM1 530 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 OR10R2Q8NGX6 335 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 UQCC2Q9BRT2 126 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 MOB1AQ9H8S9 216 aa9.31□□□□□ -0.92
CUX1-217ENST00000558836 ZNF230Q9UIE0 474 aaPredicted RBP9.31□□□□□ -0.92
CUX1-217ENST00000558836 GJE1A6NN92 205 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 TMEM14DPA8MWL7 114 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 ARPC5O15511 151 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 SSX5O60225 188 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 CDC14BO60729 498 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 RAD51DO75771 328 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 MT-CO3P00414 261 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 ITGB2P05107 769 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 OR4E1P0C645 316 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 ZNF32P17041 273 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 TMEM50BP56557 158 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 C3AR1Q16581 482 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 CEACAM16Q2WEN9 425 aa9.3□□□□□ -0.92
CUX1-217ENST00000558836 ATPAF1Q5TC12 328 aaPredicted RBP9.3□□□□□ -0.92
CUX1-217ENST00000558836 TMEM164Q5U3C3 297 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms