RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MSGN1A6NI15 193 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 F5H5K5 113 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 CDC14BO60729 498 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 UBBP0CG47 229 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 RPS27AP62979 156 aaKnown RBP11.37□□□□□ -0.59
LDLR-207ENST00000558013 UBA52P62987 128 aaKnown RBP11.37□□□□□ -0.59
LDLR-207ENST00000558013 CCL7P80098 99 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 FGL1Q08830 312 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 CPEB2Q7Z5Q1 589 aaKnown RBP11.37□□□□□ -0.59
LDLR-207ENST00000558013 ZNF283Q8N7M2 679 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 EDAQ92838 391 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 UQCC2Q9BRT2 126 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 ZNF416Q9BWM5 594 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 SLC25A32Q9H2D1 315 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 PRELID1Q9Y255 219 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 CEP192Q8TEP8 1941 aa11.37□□□□□ -0.59
LDLR-207ENST00000558013 ZNF205O95201 554 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 ZNF43P17038 809 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 CNR1P21554 472 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 DHPSP49366 369 aaPredicted RBP11.36□□□□□ -0.59
LDLR-207ENST00000558013 PPIAP62937 165 aaKnown RBP11.36□□□□□ -0.59
LDLR-207ENST00000558013 SRSF3P84103 164 aaKnown RBP11.36□□□□□ -0.59
LDLR-207ENST00000558013 CRIP3Q6Q6R5 217 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 LRRC46Q96FV0 321 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 MRGPRX4Q96LA9 322 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 GNRHR2Q96P88 292 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 RASL10BQ96S79 203 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 RNF126Q9BV68 326 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 GAREM1Q9H706 876 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 A0A0B4J2A0 478 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 OR2F2O95006 317 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 DBHP09172 617 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 SLC25A4P12235 298 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 CLDN17P56750 224 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 DCDP81605 110 aaKnown RBP11.36□□□□□ -0.59
LDLR-207ENST00000558013 SRSF4Q08170 494 aaKnown RBP11.36□□□□□ -0.59
LDLR-207ENST00000558013 OR2F1Q13607 317 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 TMEM71Q6P5X7 295 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 HOGA1Q86XE5 327 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 OR2M3Q8NG83 312 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 THAP6Q8TBB0 222 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 ELP5Q8TE02 316 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 ZNF837Q96EG3 531 aaPredicted RBP11.36□□□□□ -0.59
LDLR-207ENST00000558013 LYZL4Q96KX0 146 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 TMEM59Q9BXS4 323 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 CHMP1AQ9HD42 196 aaPredicted RBP11.36□□□□□ -0.59
LDLR-207ENST00000558013 OCIAD1Q9NX40 245 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 ZNF581Q9P0T4 197 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 SHPKQ9UHJ6 478 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 PCDHB10Q9UN67 800 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 SRPK3Q9UPE1 567 aa11.36□□□□□ -0.59
LDLR-207ENST00000558013 A0A1W2PNV4 684 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 OR5H15A6NDH6 313 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 HIST1H1DP16402 221 aaKnown RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 GLRA1P23415 457 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 SNTB1Q13884 538 aaKnown RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 OR6S1Q8NH40 331 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 TERB2Q8NHR7 220 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 DCUN1D4Q92564 292 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 UCN2Q96RP3 112 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 FAM117AQ9C073 453 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 LDAHQ9H6V9 325 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 ASF1BQ9NVP2 202 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 DUS4LO95620 317 aaKnown RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 CRHP06850 196 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 SLC6A9P48067 706 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 SUPT4H1P63272 117 aaKnown RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 SLC25A47Q6Q0C1 308 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 ZDHHC22Q8N966 263 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 ZSCAN4Q8NAM6 433 aaPredicted RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 OR5AP2Q8NGF4 316 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 ZNF385AQ96PM9 386 aaKnown RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 ZNF107Q9UII5 783 aaPredicted RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 FAM186AA6NE01 2351 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 ADAMTS20P59510 1910 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 IGHV5-10-1A0A0J9YXX1 117 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 NPIPB13A6NJU9 1138 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 NPIPB4C9JG80 1138 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 F12P00748 615 aaPredicted RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 GP1BAP07359 652 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 FAHP16930 419 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 PSMB6P28072 239 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 ARFRP1Q13795 201 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 ANKRD55Q3KP44 614 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 CLEC18BQ6UXF7 455 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 FOXRED2Q8IWF2 684 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 INO80EQ8NBZ0 244 aaPredicted RBP11.35□□□□□ -0.59
LDLR-207ENST00000558013 OR51F2Q8NH61 342 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 OR5AC2Q9NZP5 309 aa11.35□□□□□ -0.59
LDLR-207ENST00000558013 URB1O60287 2271 aaKnown RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 IGKV1D-8A0A087WSZ0 117 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 DBX1A6NMT0 343 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 DNASE2O00115 360 aaPredicted RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 SNAPC5O75971 98 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 ZFAND5O76080 213 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 WDPCPO95876 746 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 ICAM2P13598 275 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 SUMO3P55854 103 aaPredicted RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 GPR85P60893 370 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 MC2RQ01718 297 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms