RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SNTNA6NMZ2 147 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 PTBP3O95758 552 aaKnown RBP16.75■□□□□ 0.27
CPSF1-209ENST00000532725 PMELP40967 661 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 LMO4P61968 165 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF85Q03923 595 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 MFGE8Q08431 387 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF829Q3KNS6 432 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-209ENST00000532725 KLBQ86Z14 1044 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 APH1BQ8WW43 257 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 TIMD4Q96H15 378 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 Q96MT0 163 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 NARFLQ9H6Q4 476 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 G6PC2Q9NQR9 355 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 NUFIP1Q9UHK0 495 aaKnown RBP16.75■□□□□ 0.27
CPSF1-209ENST00000532725 NOP16Q9Y3C1 178 aaKnown RBP16.75■□□□□ 0.27
CPSF1-209ENST00000532725 NPTNQ9Y639 398 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 R4GMQ9 66 aa16.75■□□□□ 0.27
CPSF1-209ENST00000532725 ANK3Q12955 4377 aaKnown RBP16.74■□□□□ 0.27
CPSF1-209ENST00000532725 LOC100289279A0A1B0GTE1 492 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 METTL15A6NJ78 407 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 ANKRD30BLA7E2S9 258 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 TMEM178BH3BS89 294 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 IFNL4K9M1U5 179 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 SULT1C4O75897 302 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 IGLV3-1P01715 115 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 ACKR3P25106 362 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 ADARB1P78563 741 aaKnown RBP16.74■□□□□ 0.27
CPSF1-209ENST00000532725 C6orf52Q5T4I8 152 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 PLEKHG7Q6ZR37 379 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 KRT74Q7RTS7 529 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 MOGAT3Q86VF5 341 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 SPERTQ8NA61 448 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 CSNK2A3Q8NEV1 391 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF420Q8TAQ5 688 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-209ENST00000532725 LGALS12Q96DT0 336 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 YAE1D1Q9NRH1 226 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 RHBDD3Q9Y3P4 386 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 MALRD1Q5VYJ5 2156 aa16.74■□□□□ 0.27
CPSF1-209ENST00000532725 WBP4O75554 376 aaKnown RBP16.73■□□□□ 0.27
CPSF1-209ENST00000532725 CLIC3O95833 236 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 TTRP02766 147 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 KRT8P05787 483 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 SLC34A1Q06495 639 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 MPPED2Q15777 294 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF181Q2M3W8 571 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF691Q5VV52 312 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 LIPNQ5VXI9 398 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 TTC23Q5W5X9 447 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 PEG10Q86TG7 708 aaKnown RBP16.73■□□□□ 0.27
CPSF1-209ENST00000532725 ELMOD2Q8IZ81 293 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 DHRSXQ8N5I4 330 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 YIPF7Q8N8F6 280 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 PLPP7Q8NBV4 271 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 OR51E1Q8TCB6 317 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 DVL3Q92997 716 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-209ENST00000532725 ITFG2Q969R8 447 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 ERGIC1Q969X5 290 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 ADAT1Q9BUB4 502 aaKnown RBP16.73■□□□□ 0.27
CPSF1-209ENST00000532725 PPP1R3EQ9H7J1 279 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 AMBNQ9NP70 447 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 MRPS18AQ9NVS2 196 aaKnown RBP16.73■□□□□ 0.27
CPSF1-209ENST00000532725 OR52A1Q9UKL2 312 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 PCDHGB1Q9Y5G3 927 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 SNX5Q9Y5X3 404 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 TANC2Q9HCD6 1990 aa16.73■□□□□ 0.27
CPSF1-209ENST00000532725 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.73■□□□□ 0.273e-12■■■■□ 19.5
CPSF1-209ENST00000532725 C2CD3Q4AC94 2353 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 INAFM1C9JVW0 142 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 LOC110117498-PIK3R3F6TDL0 507 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 RPP14O95059 124 aaKnown RBP16.72■□□□□ 0.27
CPSF1-209ENST00000532725 CST4P01036 141 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 IGHV2-70P01814 119 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 DBTP11182 482 aaKnown RBP16.72■□□□□ 0.27
CPSF1-209ENST00000532725 ISL1P61371 349 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF91Q05481 1191 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 LRRC28Q86X40 367 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-209ENST00000532725 Q8TCH9 128 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 CYGBQ8WWM9 190 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 RORBQ92753 470 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 RNF166Q96A37 237 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-209ENST00000532725 GPR84Q9NQS5 396 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 ABCA2Q9BZC7 2435 aa16.72■□□□□ 0.27
CPSF1-209ENST00000532725 A8MV72 311 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-209ENST00000532725 FAM157AC9JC47 383 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 TGFAP01135 160 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 CDH15P55291 814 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 ACTC1P68032 377 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 ACTA1P68133 377 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 SNCBQ16143 134 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 PRAMEF6Q5VXH4 476 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 KCTD20Q7Z5Y7 419 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 ACBD7Q8N6N7 88 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 LINC01356Q8N9X3 169 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 MOB1AQ9H8S9 216 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 SLC22A13Q9Y226 551 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 MYRFQ9Y2G1 1151 aa16.71■□□□□ 0.27
CPSF1-209ENST00000532725 RPL36Q9Y3U8 105 aaKnown RBP16.71■□□□□ 0.27
CPSF1-209ENST00000532725 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-209ENST00000532725 A0A1B0GTI1 187 aa16.7■□□□□ 0.26
CPSF1-209ENST00000532725 DAPL1A0PJW8 107 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms