RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 MBOAT1Q6ZNC8 495 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 SLC16A14Q7RTX9 510 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 SLC16A13Q7RTY0 426 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 WDFY1Q8IWB7 410 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 ZFP41Q8N8Y5 198 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 PRELID2Q8N945 189 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 OR6N1Q8NGY5 312 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 RAB3IL1Q8TBN0 382 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 RTN4IP1Q8WWV3 396 aaPredicted RBP1.98□□□□□ -2.09
CD44-233ENST00000531141 ELMO1Q92556 727 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 SLC38A4Q969I6 547 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 FOXC2Q99958 501 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 ZNF717Q9BY31 904 aaPredicted RBP1.98□□□□□ -2.09
CD44-233ENST00000531141 HPCAL4Q9UM19 191 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 SIGLEC9Q9Y336 463 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 ACACBO00763 2458 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 RIF1Q5UIP0 2472 aaKnown RBP1.98□□□□□ -2.09
CD44-233ENST00000531141 MYO9BQ13459 2157 aa1.98□□□□□ -2.09
CD44-233ENST00000531141 WDR87Q6ZQQ6 2873 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 PCDH11XQ9BZA7 1347 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 CACNA1SQ13698 1873 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 MAP2P11137 1827 aaKnown RBP1.97□□□□□ -2.09
CD44-233ENST00000531141 AFDNP55196 1824 aaKnown RBP1.97□□□□□ -2.09
CD44-233ENST00000531141 TRBV9A0A0B4J1U6 114 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 GOLGA8OA6NCC3 632 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 FAM47DPA6NHR8 397 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 A8MUU9 505 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 GOLGA8NF8WBI6 632 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 H0YJW9 148 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 L7N2F9 121 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 NDUFAB1O14561 156 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 SCAMP2O15127 329 aaKnown RBP1.97□□□□□ -2.09
CD44-233ENST00000531141 RAD51CO43502 376 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 CHST10O43529 356 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 HMMRO75330 724 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 SLC22A5O76082 557 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 AQP8O94778 261 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 CDRT1O95170 752 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 H6PDO95479 791 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 ARG1P05089 322 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 ZNF806P0C7X5 589 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 STXBP1P61764 594 aaKnown RBP1.97□□□□□ -2.09
CD44-233ENST00000531141 CRADDP78560 199 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 CDK5Q00535 292 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 SP4Q02446 784 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 PGGHGQ32M88 737 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 TCEAL5Q5H9L2 206 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 GPR107Q5VW38 600 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 UNQ9165/PRO28630Q6UXU0 137 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 CHST4Q8NCG5 386 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 OR10AD1Q8NGE0 317 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 CIRBP-AS1Q8TBR5 109 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 TCEAL3Q969E4 200 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 SLC25A46Q96AG3 418 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 HSD17B10Q99714 261 aaKnown RBP1.97□□□□□ -2.09
CD44-233ENST00000531141 TBL1YQ9BQ87 522 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 CCDC59Q9P031 241 aaKnown RBP1.97□□□□□ -2.09
CD44-233ENST00000531141 ENOPH1Q9UHY7 261 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 TSSC4Q9Y5U2 329 aaPredicted RBP1.97□□□□□ -2.09
CD44-233ENST00000531141 ZNF609O15014 1411 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 PIK3C2GO75747 1445 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 DLEC1Q9Y238 1755 aa1.97□□□□□ -2.09
CD44-233ENST00000531141 SCN1AP35498 2009 aa1.96□□□□□ -2.09
CD44-233ENST00000531141 DNAH14Q0VDD8 3507 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 ASPMQ8IZT6 3477 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 ASH1LQ9NR48 2969 aaKnown RBP1.96□□□□□ -2.1
CD44-233ENST00000531141 CD163L1Q9NR16 1453 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 FAM208BQ5VWN6 2430 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 MYO15AQ9UKN7 3530 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 TRAV19A0A0A6YYK7 116 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 TRBV11-1A0A0K0K1C0 115 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 CENPVL3A0A0U1RRI6 287 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 K7EMT4 169 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 RNF13O43567 381 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 CDC40O60508 579 aaKnown RBP eCLIP1.96□□□□□ -2.1
CD44-233ENST00000531141 REM1O75628 298 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 SEMA3DO95025 777 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 IGHDP01880 384 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 SERPINE2P07093 398 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 CTSLP07711 333 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 OR8U9P0C7N5 309 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 ZNF688P0C7X2 276 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 RNASE2P10153 161 aaKnown RBP1.96□□□□□ -2.1
CD44-233ENST00000531141 IL1RNP18510 177 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 ATF6P18850 670 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 EIF2S2P20042 333 aaKnown RBP1.96□□□□□ -2.1
CD44-233ENST00000531141 U2AF2P26368 475 aaKnown RBP eCLIP1.96□□□□□ -2.1
CD44-233ENST00000531141 OTX1P32242 354 aaPredicted RBP1.96□□□□□ -2.1
CD44-233ENST00000531141 KIR2DS1Q14954 304 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 SNRNP35Q16560 246 aaKnown RBP1.96□□□□□ -2.1
CD44-233ENST00000531141 ARMC12Q5T9G4 340 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 C22orf42Q6IC83 251 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 REEP3Q6NUK4 255 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 CDH26Q8IXH8 852 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 COX18Q8N8Q8 333 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 OR4A4PQ8NGN8 299 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 ACMSDQ8TDX5 336 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 PHF10Q8WUB8 498 aaKnown RBP1.96□□□□□ -2.1
CD44-233ENST00000531141 LRRC29Q8WV35 223 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 MYCBPQ99417 103 aaPredicted RBP1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms