RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CASZ1Q86V15 1759 aa2.78□□□□□ -1.96
CD44-223ENST00000526553 RGPD5Q99666 1765 aa2.78□□□□□ -1.96
CD44-223ENST00000526553 TRPM3Q9HCF6 1732 aaPredicted RBP2.78□□□□□ -1.96
CD44-223ENST00000526553 ALS2Q96Q42 1657 aa2.78□□□□□ -1.96
CD44-223ENST00000526553 DLC1Q96QB1 1528 aa2.78□□□□□ -1.97
CD44-223ENST00000526553 TECPR2O15040 1411 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 KIAA0232Q92628 1395 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 IGLV1-36A0A0B4J1U3 117 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 IGHV3-74A0A0B4J1X5 117 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 IGHV3-64DA0A0J9YX35 117 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 NCBP2LA6PVI3 153 aaKnown RBP2.77□□□□□ -1.97
CD44-223ENST00000526553 POLR1CO15160 346 aaPredicted RBP2.77□□□□□ -1.97
CD44-223ENST00000526553 ERI3O43414 337 aaKnown RBP2.77□□□□□ -1.97
CD44-223ENST00000526553 SS18L1O75177 396 aaPredicted RBP2.77□□□□□ -1.97
CD44-223ENST00000526553 FABP3P05413 133 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 CSNK2A2P19784 350 aaPredicted RBP2.77□□□□□ -1.97
CD44-223ENST00000526553 RAB3AP20336 220 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 CEACAM3P40198 252 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 CXCL5P42830 114 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 UBE2AP49459 152 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 TAS2R39P59534 338 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 PSMC5P62195 406 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 ARG2P78540 354 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 GINS1Q14691 196 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 HES5Q5TA89 166 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 PRMT9Q6P2P2 845 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 OR2W3Q7Z3T1 314 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 FAM71AQ8IYT1 594 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 TRAM1L1Q8N609 369 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 NPWQ8N729 165 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 SPERTQ8NA61 448 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 OR51L1Q8NGJ5 315 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 OR51E1Q8TCB6 317 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 MRGPRFQ96AM1 343 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 NRBF2Q96F24 287 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 MSANTD3Q96H12 275 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 BTN2A3PQ96KV6 586 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 CEP170P1Q96L14 293 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 TM6SF2Q9BZW4 377 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 OR2AG1Q9H205 316 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 PRSS16Q9NQE7 514 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 SLC39A1Q9NY26 324 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 PHRF1Q9P1Y6 1649 aaKnown RBP2.77□□□□□ -1.97
CD44-223ENST00000526553 NRXN1Q9ULB1 1477 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 RGPD3A6NKT7 1758 aaPredicted RBP2.77□□□□□ -1.97
CD44-223ENST00000526553 RGPD4Q7Z3J3 1758 aa2.77□□□□□ -1.97
CD44-223ENST00000526553 RRBP1Q9P2E9 1410 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 ITSN1Q15811 1721 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 CRYBG1Q9Y4K1 1723 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 DHX57Q6P158 1386 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 TOPAZ1Q8N9V7 1692 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 IGHV3-66A0A0C4DH42 116 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 OR6C74A6NCV1 312 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 ANKRD63C9JTQ0 380 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 H3BN98 237 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 NME4O00746 187 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 NEMFO60524 1076 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 MPDU1O75352 247 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 TDP2O95551 362 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 ETHE1O95571 254 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 SLC25A27O95847 323 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 HLA-DPB1P04440 258 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 PCCAP05165 728 aaPredicted RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 KLK1P06870 262 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 USF1P22415 310 aaPredicted RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 IL32P24001 234 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 CFHR2P36980 270 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 LHX2P50458 406 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 FABP6P51161 128 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 MNAT1P51948 309 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 ZNF138P52744 262 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 AP1S2P56377 157 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 PPP1CBP62140 327 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 PRR3P79522 188 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 KIR2DS1Q14954 304 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 VAMP3Q15836 100 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 FAM83EQ2M2I3 478 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 SLC25A25Q6KCM7 469 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 ARL9Q6T311 187 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 LINC00336Q6ZUF6 198 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 LINC01551Q86U37 167 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 PRSS58Q8IYP2 241 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 ARHGAP18Q8N392 663 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 CSGALNACT2Q8N6G5 542 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 TRIML2Q8N7C3 387 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 ASCC1Q8N9N2 400 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 SNX31Q8N9S9 440 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 ZFP90Q8TF47 636 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 FAM131CQ96AQ9 280 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 DCPSQ96C86 337 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 RCN3Q96D15 328 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 RNF185Q96GF1 192 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 COL21A1Q96P44 957 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 TAAR1Q96RJ0 339 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 AGMATQ9BSE5 352 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 CDC42EP4Q9H3Q1 356 aaKnown RBP2.76□□□□□ -1.97
CD44-223ENST00000526553 KIR3DX1Q9H7L2 352 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 PSG11Q9UQ72 335 aa2.76□□□□□ -1.97
CD44-223ENST00000526553 PSG8Q9UQ74 426 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms