RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 OR5H2Q8NGV7 314 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 LYPD6BQ8NI32 183 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 TMPRSS5Q9H3S3 457 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 FAM60AQ9NP50 221 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 TMEM14DPA8MWL7 114 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 M0R036 132 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 TSPAN15O95858 294 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 CLPSP04118 112 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 H2BFMP0C1H6 154 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 OR8U8P0C7N1 319 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 COX15Q7KZN9 410 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 TMPRSS9Q7Z410 1059 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 OR5D14Q8NGL3 314 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 PATE1Q8WXA2 126 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 ZNF775Q96BV0 537 aaPredicted RBP11.81□□□□□ -0.52
USP40-214ENST00000483519 KLHDC3Q9BQ90 382 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 PRR13Q9NZ81 148 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 A0A1W2PPH5 198 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 PRAMEF26H0Y7S4 382 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 K7EPK0 472 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 TNFRSF10CO14798 259 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 DXOO77932 396 aaKnown RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 MPZL1O95297 269 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 NUDT14O95848 222 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 CTSBP07858 339 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 NQO2P16083 231 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 LAP3P28838 519 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 MMP16P51512 607 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 PPP1CAP62136 330 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 IL15RAQ13261 267 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 TOMM34Q15785 309 aaPredicted RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 OPN5Q6U736 354 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 ANGPTL5Q86XS5 388 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 FAM71E2Q8N5Q1 922 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 WDSUB1Q8N9V3 476 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 OR9K2Q8NGE7 335 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 ST7LQ8TDW4 575 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 EDARADDQ8WWZ3 215 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 RAB3CQ96E17 227 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 MALSU1Q96EH3 234 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 STARD10Q9Y365 291 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 FIGNL2A6NMB9 653 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 SYT7O43581 403 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 GP1BBP13224 206 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 RPL12P30050 165 aaKnown RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 RAB5CP51148 216 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 FAM3AP98173 230 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 ACER2Q5QJU3 275 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 ARMC6Q6NXE6 501 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 SLC26A10Q8NG04 563 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 OR2I1PQ8NGU4 316 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 ISOC2Q96AB3 205 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 RTBDNQ9BSG5 229 aaPredicted RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 NICN1Q9BSH3 213 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 NXF5Q9H1B4 397 aaKnown RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 PTGES2Q9H7Z7 377 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 FAM212BQ9NTI7 297 aaPredicted RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 C17orf105B2RV13 164 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 C2CD4DB7Z1M9 353 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 SFTPBP07988 381 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 HIST1H1DP16402 221 aaKnown RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 PI3P19957 117 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 PGCP20142 388 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 FCARP24071 287 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 ZNF93P35789 620 aaPredicted RBP11.8□□□□□ -0.52
USP40-214ENST00000483519 ID4P47928 161 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 RAB2AP61019 212 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 RHEBQ15382 184 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 FAM189A2Q15884 450 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 PRTGQ2VWP7 1150 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 LINC00346Q8IVM7 164 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 ADOQ96SZ5 270 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 LPAR5Q9H1C0 372 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 CENPMQ9NSP4 180 aa11.8□□□□□ -0.52
USP40-214ENST00000483519 DOCK8Q8NF50 2099 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 ALPK2Q86TB3 2170 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 LOC101059948A0A1B0GTJ6 334 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 hCG_1809904A0A1W2PP81 198 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 A0A1W2PR64 198 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 A0A1W2PRV1 198 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 HOXB5P09067 269 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 TNFRSF4P43489 277 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 SLC26A5P58743 744 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 KLHL24Q6TFL4 600 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 FOXRED2Q8IWF2 684 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 OR13C9Q8NGT0 318 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 ADAT3Q96EY9 351 aaPredicted RBP11.79□□□□□ -0.52
USP40-214ENST00000483519 PAPOLGQ9BWT3 736 aaKnown RBP11.79□□□□□ -0.52
USP40-214ENST00000483519 CNTNAP3Q9BZ76 1288 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 FBXL17Q9UF56 701 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 DMRT1Q9Y5R6 373 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 A6NIZ1 184 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 PLPP3O14495 311 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 ZNF217O75362 1048 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 IFNA17P01571 189 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 AMY2BP19961 511 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 SNCAP37840 140 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 OR3A2P47893 321 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 RAP1BP61224 184 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 RAP1AP62834 184 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms