RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 RND1Q92730 232 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 ADAT3Q96EY9 351 aaPredicted RBP11.13□□□□□ -0.63
VPS13D-205ENST00000473099 CPNE2Q96FN4 548 aaPredicted RBP11.13□□□□□ -0.63
VPS13D-205ENST00000473099 DIRAS2Q96HU8 199 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 LYZL4Q96KX0 146 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 TECTBQ96PL2 329 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 SORCS2Q96PQ0 1159 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 GFI1Q99684 422 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 UQCC2Q9BRT2 126 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 CHST5Q9GZS9 411 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 OR10A4Q9H209 315 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 MIXL1Q9H2W2 232 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 CDH20Q9HBT6 801 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 TUBG2Q9NRH3 451 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 EIF3KQ9UBQ5 218 aaKnown RBP11.13□□□□□ -0.63
VPS13D-205ENST00000473099 TINAGQ9UJW2 476 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 CFAP46Q8IYW2 2715 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 PRR14LQ5THK1 2151 aa11.13□□□□□ -0.63
VPS13D-205ENST00000473099 A0A0G2JNJ9 132 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 hCG_38984A0A1B0GV85 526 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 A8MXE2 369 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 ATXN7O15265 892 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-205ENST00000473099 HPGDSO60760 199 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 OCMP0CE72 109 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-205ENST00000473099 SLC2A2P11168 524 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-205ENST00000473099 CCNOP22674 350 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 CA7P43166 264 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 EVX1P49640 407 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 RIN1Q13671 783 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 OR8B8Q15620 311 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 RAB11BQ15907 218 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 UBE2NLQ5JXB2 153 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 C1orf100Q5SVJ3 147 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 GLYATL3Q5SZD4 288 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 HES5Q5TA89 166 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 ASPHD2Q6ICH7 369 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 C16orf87Q6PH81 154 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 ZNF474Q6S9Z5 364 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-205ENST00000473099 C3P1Q6ZMU1 363 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 FTMTQ8N4E7 242 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 SAMD12Q8N8I0 201 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 RAB40AQ8WXH6 277 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 DMRTA2Q96SC8 542 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 CCDC32Q9BV29 185 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 METTL17Q9H7H0 456 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-205ENST00000473099 Q9UFV3 132 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 PIGLQ9Y2B2 252 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 BSNQ9UPA5 3926 aa11.12□□□□□ -0.63
VPS13D-205ENST00000473099 COL6A6A6NMZ7 2263 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 BOD1L1Q8NFC6 3051 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 FABP12A6NFH5 140 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 FAM25AB3EWG3 89 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 FAM25CB3EWG5 89 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 FAM25GB3EWG6 89 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 LMX1BO60663 402 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 BMP5P22003 454 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 HTR2CP28335 458 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 GSK3AP49840 483 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 IDH3GP51553 393 aaPredicted RBP11.11□□□□□ -0.63
VPS13D-205ENST00000473099 SPOCK1Q08629 439 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 CNN3Q15417 329 aaKnown RBP11.11□□□□□ -0.63
VPS13D-205ENST00000473099 FAM166AQ6J272 317 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 XKRXQ6PP77 449 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 MRPL21Q7Z2W9 205 aaKnown RBP11.11□□□□□ -0.63
VPS13D-205ENST00000473099 WDR31Q8NA23 367 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 CSNK2A3Q8NEV1 391 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 OR13C9Q8NGT0 318 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 LGALS14Q8TCE9 139 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 MUCL1Q96DR8 90 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 LIN7BQ9HAP6 207 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 CYSLTR2Q9NS75 346 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 MEMO1Q9Y316 297 aa11.11□□□□□ -0.63
VPS13D-205ENST00000473099 TRGV8A0A0C4DH27 118 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 ZNF816-ZNF321PA0A0X1KG74 233 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 EEF1E1-BLOC1S5C9J1V9 151 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 EEF1E1O43324 174 aaKnown RBP11.1□□□□□ -0.63
VPS13D-205ENST00000473099 TPPPO94811 219 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 IGLV1-44P01699 117 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 PRF1P14222 555 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 SNRPBP14678 240 aaKnown RBP11.1□□□□□ -0.63
VPS13D-205ENST00000473099 PRKACBP22694 351 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 NR4A2P43354 598 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 FAM3AP98173 230 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 ZNF92Q03936 586 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 LY6DQ14210 128 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 ZNF181Q2M3W8 571 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 CLVS2Q5SYC1 327 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 CNIH2Q6PI25 160 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 FAM131AQ6UXB0 335 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 JAGN1Q8N5M9 183 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 GDPD1Q8N9F7 314 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 PNLDC1Q8NA58 520 aaKnown RBP11.1□□□□□ -0.63
VPS13D-205ENST00000473099 DNAAF1Q8NEP3 725 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 OR51A2Q8NGJ7 313 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 OR2AE1Q8NHA4 323 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 C15orf40Q8WUR7 153 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 SPSB1Q96BD6 273 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 REPIN1Q9BWE0 567 aaKnown RBP11.1□□□□□ -0.63
VPS13D-205ENST00000473099 ABCG5Q9H222 651 aa11.1□□□□□ -0.63
VPS13D-205ENST00000473099 JKAMPQ9P055 326 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms