RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 KRTAP19-4Q3LI73 84 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 WDR38Q5JTN6 314 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 C6orf10Q5SRN2 563 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 BEND6Q5SZJ8 279 aaPredicted RBP4.23□□□□□ -1.73
PTPN4-209ENST00000469511 INTS11Q5TA45 600 aaKnown RBP4.23□□□□□ -1.73
PTPN4-209ENST00000469511 ZNF613Q6PF04 617 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 C11orf88Q6PI97 169 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 HIST3H2AQ7L7L0 130 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 LHFPL4Q7Z7J7 247 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 MICU2Q8IYU8 434 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 SPERTQ8NA61 448 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 SYT8Q8NBV8 401 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 FAM156AQ8NDB6 213 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 OR5AU1Q8NGC0 362 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 OR11L1Q8NGX0 322 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 OR1F12Q8NHA8 337 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 NPRL2Q8WTW4 380 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 TMEM255BQ8WV15 326 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 GTF2H4Q92759 462 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 HIST1H2ACQ93077 130 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 MAGEB18Q96M61 343 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 DCTN5Q9BTE1 182 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 TXNIPQ9H3M7 391 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 CENPHQ9H3R5 247 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 RANBP3Q9H6Z4 567 aaPredicted RBP4.23□□□□□ -1.73
PTPN4-209ENST00000469511 SMURF2Q9HAU4 748 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 C1orf123Q9NWV4 160 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 VAPAQ9P0L0 249 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 NDRG4Q9ULP0 352 aaKnown RBP4.23□□□□□ -1.73
PTPN4-209ENST00000469511 PRPF19Q9UMS4 504 aaKnown RBP4.23□□□□□ -1.73
PTPN4-209ENST00000469511 CAB39Q9Y376 341 aaPredicted RBP4.23□□□□□ -1.73
PTPN4-209ENST00000469511 RAP2CQ9Y3L5 183 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 FRAS1Q86XX4 4008 aa4.23□□□□□ -1.73
PTPN4-209ENST00000469511 TRAV38-1A0A0B4J264 116 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SH2D7A6NKC9 451 aaPredicted RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 C12orf71A8MTZ7 269 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 CENPBD1B2RD01 187 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 E9PQ18 207 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 H0YHG0 523 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 M0QX08 132 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SYNGR1O43759 233 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 ANGPTL7O43827 346 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 PTBP3O95758 552 aaKnown RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 ECDO95905 644 aaPredicted RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 MT-ND1P03886 318 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 LYL1P12980 280 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 CTLA4P16410 223 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 MALP21145 153 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 LMO1P25800 156 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SLC1A6P48664 564 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 CRYBA2P53672 197 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 GMFBP60983 142 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 RPL27P61353 136 aaKnown RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 PCBD1P61457 104 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SCARB2Q14108 478 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 DGUOKQ16854 277 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 PAGE3Q5JUK9 113 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 GCNT6Q5T4J0 391 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 REEP3Q6NUK4 255 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 CORO6Q6QEF8 472 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 MEPCEQ7L2J0 689 aaKnown RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 MAVSQ7Z434 540 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SBSPONQ8IVN8 264 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 MKXQ8IYA7 352 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 C11orf42Q8N5U0 333 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 PCYOX1LQ8NBM8 494 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SDR9C7Q8NEX9 313 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 OR51G2Q8NGK0 314 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 LRRC8CQ8TDW0 803 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 UBLCP1Q8WVY7 318 aaPredicted RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 H1FXQ92522 213 aaKnown RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 MYDGFQ969H8 173 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 RAB24Q969Q5 203 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SLCO4A1Q96BD0 722 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SGTBQ96EQ0 304 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 ITCHQ96J02 903 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 ZIM3Q96PE6 472 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 DUX3Q96PT4 197 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 RBP7Q96R05 134 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 NPFFR1Q9GZQ6 430 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 CACYBPQ9HB71 228 aaKnown RBP4.22□□□□□ -1.73
PTPN4-209ENST00000469511 SNTG1Q9NSN8 517 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 FAM30AQ9NZY2 134 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 KAAG1Q9UBP8 84 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 NDUFAF1Q9Y375 327 aa4.22□□□□□ -1.73
PTPN4-209ENST00000469511 KIAA2026Q5HYC2 2103 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 TRAV27A0A087WT01 109 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 TRBV5-3A0A0A0MS03 114 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 TCRBV4S1A1TA0A5B7 111 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 TRAPPC13A5PLN9 417 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 A6NDX4 124 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 TMEM247A6NEH6 219 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 NKX6-3A6NJ46 265 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 B5MCH6 92 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 SLC22A3O75751 556 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 IL6P05231 212 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 SNRNP70P08621 437 aaKnown RBP4.21□□□□□ -1.74
PTPN4-209ENST00000469511 TUBG1P23258 451 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 TGM4P49221 684 aa4.21□□□□□ -1.74
PTPN4-209ENST00000469511 DAP3P51398 398 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms