RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 SLC19A3Q9BZV2 496 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 CDH20Q9HBT6 801 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 IGHV4-28A0A0C4DH34 117 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 hDV102S1A0JD36 115 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 C11orf94C9JXX5 98 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 PRAF2O60831 178 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 FCN3O75636 299 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 GLCEO94923 617 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 AKR7A3O95154 331 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 LCATP04180 440 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 CD74P04233 296 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 OR8U9P0C7N5 309 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 SMIM18P0DKX4 95 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 PRG2P13727 222 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 CTRB1P17538 263 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 AHCYP23526 432 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 SLC6A6P31641 620 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 GGT2P36268 569 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 MPV17P39210 176 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 TTPAP49638 278 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 CRIP2P52943 208 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-207ENST00000468384 MTCP1P56278 107 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 EGR4Q05215 589 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 CD300CQ08708 224 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 CUL3Q13618 768 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 SLC17A1Q14916 467 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 TBC1D28Q2M2D7 210 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 CTRB2Q6GPI1 263 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 TYW3Q6IPR3 259 aaKnown RBP3.6□□□□□ -1.83
HMGB1-207ENST00000468384 RNF130Q86XS8 419 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 SERPINA12Q8IW75 414 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 AQP12AQ8IXF9 295 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 ELMOD2Q8IZ81 293 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 DYNAPQ8N1N2 210 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 DEFB125Q8N687 156 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 ZIC4Q8N9L1 334 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 OR7G2Q8NG99 324 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 OR1N2Q8NGR9 330 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 THAP6Q8TBB0 222 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 CHPT1Q8WUD6 406 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 SLC38A5Q8WUX1 472 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 ARPC1AQ92747 370 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 NABP1Q96AH0 204 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 MTERF3Q96E29 417 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 BIRC8Q96P09 236 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 OR4C12Q96R67 309 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF382Q96SR6 550 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 TBL1YQ9BQ87 522 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 EBPLQ9BY08 206 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 BCL2L14Q9BZR8 327 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 REEP1Q9H902 201 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 RNPEPL1Q9HAU8 725 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 RAB9BQ9NP90 201 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 ADA2Q9NZK5 511 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 TP53TG1Q9Y2A0 90 aa3.6□□□□□ -1.83
HMGB1-207ENST00000468384 STRAPQ9Y3F4 350 aaKnown RBP3.6□□□□□ -1.83
HMGB1-207ENST00000468384 C13orf42A0A1B0GVH6 325 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 MFN2O95140 757 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 CH25HO95992 272 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 IFNA21P01568 189 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 IFNA17P01571 189 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 ABHD2P08910 425 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 FGF2P09038 288 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 GBX2P52951 348 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF616Q08AN1 781 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 CUL1Q13616 776 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 DDX39BQ13838 428 aaKnown RBP3.59□□□□□ -1.83
HMGB1-207ENST00000468384 TFDP2Q14188 446 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 STK38Q15208 465 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 IFI44LQ53G44 452 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 SYT14P1Q58G82 188 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 PDZK1Q5T2W1 519 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 C10orf25Q5T742 122 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 OR52E8Q6IFG1 317 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 SLC18B1Q6NT16 456 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 C3orf33Q6P1S2 294 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 BTNL8Q6UX41 500 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 TSEN54Q7Z6J9 526 aaKnown RBP3.59□□□□□ -1.83
HMGB1-207ENST00000468384 LINC00596Q86U02 117 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF584Q8IVC4 421 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 MAP7D3Q8IWC1 876 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 ARHGAP24Q8N264 748 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 C19orf18Q8NEA5 215 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 OR7A2PQ8NGA2 310 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 OR4K14Q8NGD5 310 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 DLX4Q92988 240 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-207ENST00000468384 MCHR2Q969V1 340 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 NOL4LQ96MY1 436 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-207ENST00000468384 BTBD10Q9BSF8 475 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 RNF126Q9BV68 326 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 ANKRA2Q9H9E1 313 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 ATAD3AQ9NVI7 634 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 DDX18Q9NVP1 670 aaKnown RBP3.59□□□□□ -1.83
HMGB1-207ENST00000468384 SLC2A6Q9UGQ3 507 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 GPR132Q9UNW8 380 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 TMED5Q9Y3A6 229 aa3.59□□□□□ -1.83
HMGB1-207ENST00000468384 SPIN1Q9Y657 262 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-207ENST00000468384 TMEM114B3SHH9 223 aa3.58□□□□□ -1.84
HMGB1-207ENST00000468384 SAP18O00422 153 aaKnown RBP3.58□□□□□ -1.84
HMGB1-207ENST00000468384 DVL1O14640 695 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms