RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ZFP3Q96NJ6 502 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 TEAD3Q99594 435 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 GPR21Q99679 349 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 BPIFA3Q9BQP9 254 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 ELOVL6Q9H5J4 265 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 CSNK1G1Q9HCP0 422 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 DCAF16Q9NXF7 216 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 LRRC42Q9Y546 428 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 HIVEP2P31629 2446 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 CEACAM18A8MTB9 384 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 ERI3O43414 337 aaKnown RBP1.92□□□□□ -2.1
USP40-209ENST00000452724 OXTP01178 125 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 RPN2P04844 631 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 GABRG2P18507 467 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 RAB5AP20339 215 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 NTF3P20783 257 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 GSTM3P21266 225 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 PCK1P35558 622 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 CMC4P56277 68 aaPredicted RBP1.92□□□□□ -2.1
USP40-209ENST00000452724 RPS15AP62244 130 aaKnown RBP1.92□□□□□ -2.1
USP40-209ENST00000452724 MAD2L1BPQ15013 274 aaPredicted RBP1.92□□□□□ -2.1
USP40-209ENST00000452724 KLHL12Q53G59 568 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 MED27Q6P2C8 311 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 PRSS54Q6PEW0 395 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 DEGS2Q6QHC5 323 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 WDR82Q6UXN9 313 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 C16orf47Q6ZP98 133 aaPredicted RBP1.92□□□□□ -2.1
USP40-209ENST00000452724 OFCC1Q8IZS5 231 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 C1orf64Q8NEQ6 169 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 OR51F2Q8NH61 342 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 ENKURQ8TC29 256 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 CDS1Q92903 461 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 GPR82Q96P67 336 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 OR4K3Q96R72 315 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 MARVELD1Q9BSK0 173 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 LHX5Q9H2C1 402 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 EXO5Q9H790 373 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 MYEF2Q9P2K5 600 aaKnown RBP1.92□□□□□ -2.1
USP40-209ENST00000452724 FARSAQ9Y285 508 aaKnown RBP1.92□□□□□ -2.1
USP40-209ENST00000452724 SIGLEC7Q9Y286 467 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 NSD2O96028 1365 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 TRIOBPQ9H2D6 2365 aa1.92□□□□□ -2.1
USP40-209ENST00000452724 SEC16AO15027 2179 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 IGKV2-24A0A0C4DH68 120 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 MANBAO00462 879 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 DNAJB6O75190 326 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 CD34P28906 385 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 TGFBR1P36897 503 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 MPV17P39210 176 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 IDH2P48735 452 aaKnown RBP1.91□□□□□ -2.1
USP40-209ENST00000452724 RPS11P62280 158 aaKnown RBP eCLIP1.91□□□□□ -2.1
USP40-209ENST00000452724 KDSRQ06136 332 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 NAB1Q13506 487 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 LUZP6Q538Z0 58 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 BEX5Q5H9J7 111 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 RWDD4Q6NW29 188 aaKnown RBP1.91□□□□□ -2.1
USP40-209ENST00000452724 APRG1Q8IVJ8 170 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 ZNF547Q8IVP9 402 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 STK40Q8N2I9 435 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 C8orf31Q8N9H6 132 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 OR2Z1Q8NG97 314 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 DCAKDQ8WVC6 231 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 JSRP1Q96MG2 331 aaPredicted RBP1.91□□□□□ -2.1
USP40-209ENST00000452724 C1orf50Q9BV19 199 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 AUNIPQ9H7T9 357 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 MRPS30Q9NP92 439 aaKnown RBP1.91□□□□□ -2.1
USP40-209ENST00000452724 TBC1D24Q9ULP9 559 aa1.91□□□□□ -2.1
USP40-209ENST00000452724 HMCN1Q96RW7 5635 aa1.9□□□□□ -2.1
USP40-209ENST00000452724 M0R1X1 148 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 WRBO00258 174 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 SLC19A2O60779 497 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 TDP2O95551 362 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 KRT16P08779 473 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 UBCP0CG48 685 aaKnown RBP1.9□□□□□ -2.11
USP40-209ENST00000452724 PRKACBP22694 351 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 COL8A2P25067 703 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 TAS2R43P59537 309 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 TFDP2Q14188 446 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 Q6ZSR6 202 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 DRAM1Q8N682 238 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 ZNF680Q8NEM1 530 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 RBFOX1Q9NWB1 397 aaKnown RBP1.9□□□□□ -2.11
USP40-209ENST00000452724 MCUBQ9NWR8 336 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 TAS2R5Q9NYW4 299 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 YARS2Q9Y2Z4 477 aaKnown RBP1.9□□□□□ -2.11
USP40-209ENST00000452724 SHROOM3Q8TF72 1996 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 MROH7Q68CQ1 1323 aa1.9□□□□□ -2.11
USP40-209ENST00000452724 A0A0A6YYD5 115 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 A0A1W2PRD5 423 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 PRAMEF26H0Y7S4 382 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 MFNGO00587 321 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 XRCC2O43543 280 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 OR7C2O60412 319 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 CBR3O75828 277 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 CNMDO75829 334 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 SCO1O75880 301 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 IGLV2-8P01709 118 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 TRBV12-3P01733 135 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 OR8G3PP0DMU2 310 aa1.89□□□□□ -2.11
USP40-209ENST00000452724 CD28P10747 220 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms