RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 GABRG1Q8N1C3 465 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 AKAP1Q92667 903 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP39-207ENST00000450066 SPSB4Q96A44 273 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 ZFP3Q96NJ6 502 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 SLX1AQ9BQ83 275 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 CHST5Q9GZS9 411 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 CNTD2Q9H8S5 307 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 PROCRQ9UNN8 238 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 CACNA1AO00555 2505 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 LYZL6O75951 148 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 TPPPO94811 219 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 TMIGD3P0DMS9 266 aaPredicted RBP12.38□□□□□ -0.43
USP39-207ENST00000450066 EDN3P14138 238 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 ZNF93P35789 620 aaPredicted RBP12.38□□□□□ -0.43
USP39-207ENST00000450066 MAP2K3P46734 347 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 MMP15P51511 669 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 RIPPLY1Q0D2K3 151 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 ASAH1Q13510 395 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 C1orf162Q8NEQ5 155 aaPredicted RBP12.38□□□□□ -0.43
USP39-207ENST00000450066 OR4D6Q8NGJ1 314 aa12.38□□□□□ -0.43
USP39-207ENST00000450066 NKX3-1Q99801 234 aaPredicted RBP12.38□□□□□ -0.43
USP39-207ENST00000450066 MRPS7Q9Y2R9 242 aaKnown RBP12.38□□□□□ -0.43
USP39-207ENST00000450066 CHD8Q9HCK8 2581 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 TLN1Q9Y490 2541 aaKnown RBP12.37□□□□□ -0.43
USP39-207ENST00000450066 IGKV1-9A0A0C4DH69 117 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 TMEM272A0A1B0GTI8 110 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 CIB4A0PJX0 185 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 CTDSPLO15194 276 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 RAD51DO75771 328 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 IL2RAP01589 272 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 SERPINA5P05154 406 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 CCNOP22674 350 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 ACKR3P25106 362 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 RANBP1P43487 201 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 ZNF92Q03936 586 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 PLA2G7Q13093 441 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 TAB1Q15750 504 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 MDP1Q86V88 176 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 C19orf18Q8NEA5 215 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 SSC4DQ8WTU2 575 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 PTX4Q96A99 478 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 APOBEC3DQ96AK3 386 aaPredicted RBP12.37□□□□□ -0.43
USP39-207ENST00000450066 ZNF75AQ96N20 296 aa12.37□□□□□ -0.43
USP39-207ENST00000450066 THAP7Q9BT49 309 aaPredicted RBP12.37□□□□□ -0.43
USP39-207ENST00000450066 hCG_38984A0A1B0GV85 526 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 C1QTNF9BB2RNN3 333 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 LDLRAD4O15165 306 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 C1QTNF9P0C862 333 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 CCL2P13500 99 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 CDK2P24941 298 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 APLNRP35414 380 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 MNDAP41218 407 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 GSK3AP49840 483 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 EFNB2P52799 333 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 UBE2NP61088 152 aaKnown RBP12.36□□□□□ -0.43
USP39-207ENST00000450066 FAM3AP98173 230 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 TNK1Q13470 666 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 P2RY6Q15077 328 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 UBE2V2Q15819 145 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 TMEM69Q5SWH9 247 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 C15orf40Q8WUR7 153 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 SNRNP40Q96DI7 357 aaKnown RBP12.36□□□□□ -0.43
USP39-207ENST00000450066 XRCC3O43542 346 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 GSTZ1O43708 216 aaPredicted RBP12.36□□□□□ -0.43
USP39-207ENST00000450066 CTAG2O75638 210 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 BPNT1O95861 308 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 HCKP08631 526 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 PRF1P14222 555 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 PTH2RP49190 550 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 OR8B8Q15620 311 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 HACD4Q5VWC8 232 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 GDPD3Q7L5L3 318 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 IZUMO1Q8IYV9 350 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 ZNF610Q8N9Z0 462 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 TRIM63Q969Q1 353 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 RFT1Q96AA3 541 aa12.36□□□□□ -0.43
USP39-207ENST00000450066 TP63Q9H3D4 680 aaPredicted RBP12.36□□□□□ -0.43
USP39-207ENST00000450066 hCG_2014768A0A024R1R8 64 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 PRRG2O14669 202 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 CEACAM8P31997 349 aaPredicted RBP12.35□□□□□ -0.43
USP39-207ENST00000450066 BEND4Q6ZU67 534 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 RPRMLQ8N4K4 120 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 NAXEQ8NCW5 288 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 SLC30A7Q8NEW0 376 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 ITFG2Q969R8 447 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 MS4A3Q96HJ5 214 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 OPN3Q9H1Y3 402 aaPredicted RBP12.35□□□□□ -0.43
USP39-207ENST00000450066 KCNK15Q9H427 330 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 DIABLOQ9NR28 239 aa12.35□□□□□ -0.43
USP39-207ENST00000450066 PLA2G10O15496 165 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 EEF1E1O43324 174 aaKnown RBP12.34□□□□□ -0.43
USP39-207ENST00000450066 ZNF14P17017 642 aaPredicted RBP12.34□□□□□ -0.43
USP39-207ENST00000450066 RAB6AP20340 208 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 INPP1P49441 399 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 MALLQ13021 153 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 KISS1Q15726 138 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 ZBTB37Q5TC79 503 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 TMEM42Q69YG0 159 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 UNQ6494/PRO21346Q6UXR6 183 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 ANGPTL5Q86XS5 388 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms