RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 MRPL41Q8IXM3 137 aaKnown RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SLC38A9Q8NBW4 561 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 OR51S1Q8NGJ8 323 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 PAQR8Q8TEZ7 354 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 GHRLQ9UBU3 117 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 TMA7Q9Y2S6 64 aaKnown RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 TSC2P49815 1807 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 TOR1AO14656 332 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SPRY3O43610 288 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 ANGPTL7O43827 346 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 GNB3P16520 340 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 LSM6P62312 80 aaKnown RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF85Q03923 595 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 MSMO1Q15800 293 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SSX1Q16384 188 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 FAM76BQ5HYJ3 339 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 PPP1R32Q7Z5V6 425 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 OR6S1Q8NH40 331 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SPSB1Q96BD6 273 aa6.58□□□□□ -1.36
SYNE1-213ENST00000448038 SLC25A21Q9BQT8 299 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 MRM2Q9UI43 246 aaKnown RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 TCF20Q9UGU0 1960 aaKnown RBP6.58□□□□□ -1.36
SYNE1-213ENST00000448038 A0A1W2PPH5 198 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 FAM221AA4D161 298 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 LRP3O75074 770 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 PTP4A3O75365 173 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 CRYBB2P43320 205 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 CREB3L2Q70SY1 520 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 OR10J5Q8NHC4 309 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 NUDCD2Q8WVJ2 157 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 RND1Q92730 232 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 COPS3Q9UNS2 423 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 RP1P56715 2156 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 DSPPQ9NZW4 1301 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 A0A1B0GVG6 124 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 SCGB2A1O75556 95 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 IFNA17P01571 189 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 GLAP06280 429 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 OPRM1P35372 400 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 NUBP1P53384 320 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 MFGE8Q08431 387 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 CDCP2Q5VXM1 449 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 TMEM108Q6UXF1 575 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 OSR2Q8N2R0 312 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 DMBX1Q8NFW5 382 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 FLVCR1-AS1Q8TAF5 88 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF385AQ96PM9 386 aaKnown RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 ADAT1Q9BUB4 502 aaKnown RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 MFFQ9GZY8 342 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 FAM234AQ9H0X4 552 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 FZR1Q9UM11 496 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 TP53TG5Q9Y2B4 290 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 MEIKINA0A087WXM9 373 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 CEBPZOSA8MTT3 80 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 H7C2Y5 167 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 ENSAO43768 121 aaKnown RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 TBX6O95947 436 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 MAGEB1P43366 347 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 GNG3P63215 75 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 DBPQ10586 325 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF658BQ4V348 819 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 PHLDA2Q53GA4 152 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 ARTNQ5T4W7 220 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 CDC20BQ86Y33 519 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 OR2Z1Q8NG97 314 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 C1orf123Q9NWV4 160 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 PTPRDP23468 1912 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 DLL1O00548 723 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 ASAH2BP0C7U1 165 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 RPS4Y1P22090 263 aaKnown RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 PTGER4P35408 488 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 TMPRSS3P57727 454 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 RPL23AP62750 156 aaKnown RBP6.57□□□□□ -1.36
SYNE1-213ENST00000448038 STX12Q86Y82 276 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 AIFM2Q9BRQ8 373 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 ADAM19Q9H013 955 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 C20orf85Q9H1P6 137 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 GPR35Q9HC97 309 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 NLRC5Q86WI3 1866 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 GPR179Q6PRD1 2367 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 RECKO95980 971 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 CSF3P09919 207 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 OR8U9P0C7N5 309 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 IL11P20809 199 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 MPGP29372 298 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 DEFA5Q01523 94 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 NOXA1Q86UR1 476 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 CELF2-AS1Q8N7Q2 184 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 HES7Q9BYE0 225 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 PLK3Q9H4B4 646 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 DOCK8Q8NF50 2099 aa6.57□□□□□ -1.36
SYNE1-213ENST00000448038 PHF1O43189 567 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 HEXAP06865 529 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PCMT1P22061 227 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 GALP22466 123 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 CA6P23280 308 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ECI1P42126 302 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 RSPO4Q2I0M5 234 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SLC25A30Q5SVS4 291 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 BHLHA15Q7RTS1 189 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms