RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZNF281Q9Y2X9 895 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 CENPEQ02224 2701 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 INMTO95050 263 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 CPEP16870 476 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 CD53P19397 219 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 LIPAP38571 399 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 RIPPLY1Q0D2K3 151 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 NKPD1Q17RQ9 610 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 SWI5Q1ZZU3 235 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 MST1LQ2TV78 715 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 ALKBH6Q3KRA9 238 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 LIPKQ5VXJ0 399 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 DTX2Q86UW9 622 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 OR5AS1Q8N127 324 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 SEMA6DQ8NFY4 1073 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 OR8G5Q8NG78 346 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 OR56B2PQ8NGI1 322 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 OR14K1Q8NGZ2 314 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 GPR148Q8TDV2 347 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 SOX7Q9BT81 388 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 MRPS26Q9BYN8 205 aaKnown RBP13.5□□□□□ -0.25
USP40-206ENST00000443711 CYSLTR2Q9NS75 346 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 MYEF2Q9P2K5 600 aaKnown RBP13.5□□□□□ -0.25
USP40-206ENST00000443711 CGGBP1Q9UFW8 167 aaPredicted RBP13.5□□□□□ -0.25
USP40-206ENST00000443711 V9GYS6 101 aa13.5□□□□□ -0.25
USP40-206ENST00000443711 ARFGEF3Q5TH69 2177 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 PLSCR5A0PG75 271 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 DHRS7CA6NNS2 312 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 ANKRD30BLA7E2S9 258 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 H3BSH0 61 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 CD8AP01732 235 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 SMIM18P0DKX4 95 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 BMP4P12644 408 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 JUNBP17275 347 aaPredicted RBP13.49□□□□□ -0.25
USP40-206ENST00000443711 SNRPD2P62316 118 aaKnown RBP13.49□□□□□ -0.25
USP40-206ENST00000443711 TNK1Q13470 666 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 TSTQ16762 297 aaKnown RBP13.49□□□□□ -0.25
USP40-206ENST00000443711 YIF1BQ5BJH7 314 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 TMEM255AQ5JRV8 349 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 SYT6Q5T7P8 510 aaPredicted RBP13.49□□□□□ -0.25
USP40-206ENST00000443711 ZBTB37Q5TC79 503 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 FTMTQ8N4E7 242 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 MS4A15Q8N5U1 240 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 BHLHE23Q8NDY6 225 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 MUL1Q969V5 352 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 PGLYRP3Q96LB9 341 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 TRAF4Q9BUZ4 470 aaPredicted RBP13.49□□□□□ -0.25
USP40-206ENST00000443711 DYNLRB1Q9NP97 96 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 TMEM100Q9NV29 134 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 LAMP3Q9UQV4 416 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 PIGLQ9Y2B2 252 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 PMF1-BGLAPU3KQ54 211 aa13.49□□□□□ -0.25
USP40-206ENST00000443711 FLNBO75369 2602 aaKnown RBP13.48□□□□□ -0.25
USP40-206ENST00000443711 HECTD1Q9ULT8 2610 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 M0R233 179 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 SOD3P08294 240 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 ACKR3P25106 362 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 MMP15P51511 669 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 TRAM1Q15629 374 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 ZMAT1Q5H9K5 638 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 PHC2Q8IXK0 858 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 OR13C3Q8NGS6 347 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 OR13G1Q8NGZ3 307 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 OR10AC1Q8NH08 325 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 TSEN15Q8WW01 171 aaKnown RBP13.48□□□□□ -0.25
USP40-206ENST00000443711 C10orf35Q96D05 121 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 SLC22A4Q9H015 551 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 MS4A5Q9H3V2 200 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 PLEKHA1Q9HB21 404 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 MRPL15Q9P015 296 aaKnown RBP13.48□□□□□ -0.25
USP40-206ENST00000443711 ENPP5Q9UJA9 477 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 EDARQ9UNE0 448 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 DHDHQ9UQ10 334 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 AKAP6Q13023 2319 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 DCHS2Q6V1P9 2916 aa13.48□□□□□ -0.25
USP40-206ENST00000443711 ZNF816-ZNF321PA0A0X1KG74 233 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 CCRL2O00421 344 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 SERPINA3P01011 423 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 CST4P01036 141 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 CD2P06729 351 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 PRF1P14222 555 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 FAHP16930 419 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 ZNF20P17024 532 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 GNALP38405 381 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 ALDH3B1P43353 468 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 ZNF81P51508 661 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 GP2P55259 537 aaKnown RBP13.47□□□□□ -0.25
USP40-206ENST00000443711 CRYBG3Q68DQ2 2970 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 C11orf71Q6IPW1 123 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 KRT74Q7RTS7 529 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 OR51A4Q8NGJ6 313 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 RGP1Q92546 391 aaPredicted RBP13.47□□□□□ -0.25
USP40-206ENST00000443711 PIGTQ969N2 578 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 FGGYQ96C11 551 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 SLC30A2Q9BRI3 323 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 TMED9Q9BVK6 235 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 ZNF275Q9NSD4 429 aaPredicted RBP13.47□□□□□ -0.25
USP40-206ENST00000443711 ZDHHC8Q9ULC8 765 aa13.47□□□□□ -0.25
USP40-206ENST00000443711 NOP16Q9Y3C1 178 aaKnown RBP13.47□□□□□ -0.25
USP40-206ENST00000443711 TRBV5-5A0A0J9YX44 114 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms