RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	NCMAP	Q5T1S8	102 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF684	Q5T5D7	378 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	LCN1P1	Q5VSP4	162 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	UBE2U	Q5VVX9	321 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	RNLS	Q5VYX0	342 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	VWA1	Q6PCB0	445 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	TFAP2E	Q6VUC0	442 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC16A9	Q7RTY1	509 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	HDDC2	Q7Z4H3	204 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	LHFPL3	Q86UP9	236 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	ERI1	Q8IV48	349 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	LINC00346	Q8IVM7	164 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC35F2	Q8IXU6	374 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	NANOGP1	Q8N7R0	232 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	POMGNT2	Q8NAT1	580 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR10H4	Q8NGA5	316 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR10S1	Q8NGN2	331 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR6N1	Q8NGY5	312 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR6N2	Q8NGY6	317 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	FGFBP3	Q8TAT2	258 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	NTN5	Q8WTR8	489 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	SPRYD4	Q8WW59	207 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	RFK	Q969G6	155 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	MYDGF	Q969H8	173 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	MUL1	Q969V5	352 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	GMPPA	Q96IJ6	420 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	OPALIN	Q96PE5	141 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	RBP7	Q96R05	134 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	INTS14	Q96SY0	518 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	CNN2	Q99439	309 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	SUCNR1	Q9BXA5	334 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	CACNG6	Q9BXT2	260 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	PRRG4	Q9BZD6	226 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	ULBP2	Q9BZM5	246 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	LINC00470	Q9BZP3	86 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	ISG20L2	Q9H9L3	353 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	UNKL	Q9H9P5	680 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	GPR35	Q9HC97	309 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	EMC7	Q9NPA0	242 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	CCNB1IP1	Q9NPC3	277 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	POLE4	Q9NR33	117 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	CISD1	Q9NZ45	108 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	EMC3	Q9P0I2	261 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	SCOC	Q9UIL1	159 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	KCNG2	Q9UJ96	466 aa		4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	NOSIP	Q9Y314	301 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	EXOSC1	Q9Y3B2	195 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-206	ENST00000441089		A0A1W2PPL8	197 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	TMEM129	A0AVI4	362 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	DAPL1	A0PJW8	107 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	IRGM	A1A4Y4	181 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	DPPA5	A6NC42	116 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	SNTN	A6NMZ2	147 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ZNF99	A8MXY4	864 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089		E9PI62	339 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ZNF670-ZNF695	F2Z2N8	137 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	RPL36A-HNRNPH2	H7BZ11	118 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	PSMD9	O00233	223 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ZNF593	O00488	134 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	MRPL33	O75394	65 aa	Known RBP	4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	CLPTM1	O96005	669 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	HLA-DQA2	P01906	255 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ITGA5	P08648	1049 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	SPARC	P09486	303 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	OR2T7	P0C7T2	308 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	MSR1	P21757	451 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ANOS1	P23352	680 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ATP6V1E1	P36543	226 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	TGFBR2	P37173	567 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	LIPA	P38571	399 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	OR3A2	P47893	321 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	CENPA	P49450	140 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ENTPD1	P49961	510 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	DVL1P1	P54792	670 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	OR12D2	P58182	307 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	MRPS34	P82930	218 aa	Known RBP	4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	GALE	Q14376	348 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	RAB39A	Q14964	217 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	SSX1	Q16384	188 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	PCK2	Q16822	640 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	CDON	Q4KMG0	1287 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	TP53I3	Q53FA7	332 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	TEX30	Q5JUR7	227 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	SYT6	Q5T7P8	510 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	C9orf135	Q5VTT2	229 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	SLC18B1	Q6NT16	456 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	DNM1P34	Q6PK57	102 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	CORO6	Q6QEF8	472 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ZNF322	Q6U7Q0	402 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	CFAP77	Q6ZQR2	320 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ZNF367	Q7RTV3	350 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	DPY19L4	Q7Z388	723 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	SATL1	Q86VE3	508 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	GLCCI1	Q86VQ1	547 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	GLB1L2	Q8IW92	636 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	GPR137C	Q8N3F9	429 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ACBD7	Q8N6N7	88 aa		4.08	□□□□□ -1.76
PTPN4-206	ENST00000441089	ZFP41	Q8N8Y5	198 aa		4.08	□□□□□ -1.76

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