RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 GFOD2Q3B7J2 385 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 C22orf42Q6IC83 251 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 MRPL21Q7Z2W9 205 aaKnown RBP12.25□□□□□ -0.45
SF3B1-204ENST00000414963 COMMD2Q86X83 199 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 SERPINA12Q8IW75 414 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 SEMA6DQ8NFY4 1073 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 SLC25A40Q8TBP6 338 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 KLF14Q8TD94 323 aaPredicted RBP12.25□□□□□ -0.45
SF3B1-204ENST00000414963 TSEN15Q8WW01 171 aaKnown RBP12.25□□□□□ -0.45
SF3B1-204ENST00000414963 FGGYQ96C11 551 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 PLPPR2Q96GM1 343 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 TMEM204Q9BSN7 226 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 OR2J1Q9GZK6 312 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 EXOSC4Q9NPD3 245 aaKnown RBP12.25□□□□□ -0.45
SF3B1-204ENST00000414963 NOX4Q9NPH5 578 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 ADGRG4Q8IZF6 3080 aa12.25□□□□□ -0.45
SF3B1-204ENST00000414963 CD300LBA8K4G0 201 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 H3BMQ9 156 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 SIAH2O43255 324 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 LMX1BO60663 402 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 ALX3O95076 343 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 CD3EP07766 207 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 ZNF250P15622 560 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 SELEP16581 610 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 IGFBP3P17936 291 aaPredicted RBP12.24□□□□□ -0.45
SF3B1-204ENST00000414963 SRMP19623 302 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 FSTP19883 344 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 ACKR3P25106 362 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 THBS4P35443 961 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 VBP1P61758 197 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 NCS1P62166 190 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 SPOCK1Q08629 439 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 SNTB2Q13425 540 aaKnown RBP12.24□□□□□ -0.45
SF3B1-204ENST00000414963 ZNF718Q3SXZ3 478 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 HSD17B12Q53GQ0 312 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 FAM27D1Q5T7N8 215 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 TMEM42Q69YG0 159 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 ZNF529Q6P280 563 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 UTS2BQ765I0 119 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 CSNK2A3Q8NEV1 391 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 OR5D14Q8NGL3 314 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 TMEM171Q8WVE6 324 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 PP6455Q8WZ26 134 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 C12orf43Q96C57 262 aaKnown RBP12.24□□□□□ -0.45
SF3B1-204ENST00000414963 CMBLQ96DG6 245 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 ADAT3Q96EY9 351 aaPredicted RBP12.24□□□□□ -0.45
SF3B1-204ENST00000414963 SPOCK3Q9BQ16 436 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 OR51B6Q9H340 312 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 ZNF442Q9H7R0 627 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 FOXJ3Q9UPW0 622 aa12.24□□□□□ -0.45
SF3B1-204ENST00000414963 CCDC160A6NGH7 325 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 SHISA9B4DS77 424 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 H3BSH0 61 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 GOSR1O95249 250 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 CST4P01036 141 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 KITLGP21583 273 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 CALRP27797 417 aaKnown RBP12.23□□□□□ -0.45
SF3B1-204ENST00000414963 MTNR1BP49286 362 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 ERVS71-1P61550 626 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 LSM3P62310 102 aaKnown RBP12.23□□□□□ -0.45
SF3B1-204ENST00000414963 PSG7Q13046 419 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 SPATA46Q5T0L3 261 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 ASPHD2Q6ICH7 369 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 RGS7BPQ6MZT1 257 aaPredicted RBP12.23□□□□□ -0.45
SF3B1-204ENST00000414963 SLC22A25Q6T423 547 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 TPRA1Q86W33 373 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 PIAS4Q8N2W9 510 aaPredicted RBP12.23□□□□□ -0.45
SF3B1-204ENST00000414963 PIGTQ969N2 578 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 RNF167Q9H6Y7 350 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 SNTG1Q9NSN8 517 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 PIGLQ9Y2B2 252 aa12.23□□□□□ -0.45
SF3B1-204ENST00000414963 IGLV3-9A0A075B6K5 115 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 TRAV8-7A0A075B6U6 113 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 ZNF816-ZNF321PA0A0X1KG74 233 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 A0A1B0GWJ7 208 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 A0A1W2PPK0 400 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 GGT3PA6NGU5 568 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 IQCF6A8MYZ5 107 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 IL1AP01583 271 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 IGHV3-13P01766 116 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 CD37P11049 281 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 FAHP16930 419 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 ZNF20P17024 532 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 MPV17P39210 176 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 MSMPQ1L6U9 139 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 CLVS2Q5SYC1 327 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 USP43Q70EL4 1123 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 FTMTQ8N4E7 242 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 KBTBD8Q8NFY9 601 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 OR56B2PQ8NGI1 322 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 CHST5Q9GZS9 411 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 ZCCHC4Q9H5U6 513 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 PLEKHA1Q9HB21 404 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 CA10Q9NS85 328 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 MRPL15Q9P015 296 aaKnown RBP12.22□□□□□ -0.45
SF3B1-204ENST00000414963 CKLFQ9UBR5 152 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 PURGQ9UJV8 347 aaKnown RBP12.22□□□□□ -0.45
SF3B1-204ENST00000414963 RNF115Q9Y4L5 304 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 LRRK2Q5S007 2527 aa12.22□□□□□ -0.45
SF3B1-204ENST00000414963 CADP27708 2225 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms