RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 C5orf51A6NDU8 294 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 DHRS7CA6NNS2 312 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 SCAMP1O15126 338 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 SYT7O43581 403 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 MT-ND4LP03901 98 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 CRYBA1P05813 215 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 SEC11BP0C7V7 166 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 MUC1P15941 1255 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF93P35789 620 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 VEGFBP49765 207 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 EMP2P54851 167 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 STARD6P59095 220 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RAB5BP61020 215 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 HSF1Q00613 529 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 C17orf67Q0P5P2 114 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 DEFB110Q30KQ9 67 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 C1QL3Q5VWW1 255 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 FOXL2NBQ6ZUU3 175 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 DOK3Q7L591 496 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 SLC29A4Q7RTT9 530 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM200AQ86VY9 491 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF561Q8N587 486 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 MARCH1Q8TCQ1 289 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RXFP4Q8TDU9 374 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 PAQR8Q8TEZ7 354 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 FGGYQ96C11 551 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 SLAMF6Q96DU3 332 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RAB3CQ96E17 227 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ZC3H10Q96K80 434 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 KLHDC3Q9BQ90 382 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF251Q9BRH9 671 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 FAM86C1Q9NVL1 165 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 EDARQ9UNE0 448 aa5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 RPH3AQ9Y2J0 694 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF705EA8MWA4 302 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 NPIPA5E9PKD4 350 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 C11orf98E9PRG8 122 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 CTSDP07339 412 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 SPP1P10451 314 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 NR2C1P13056 603 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GABRG2P18507 467 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 PTAFRP25105 342 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LAP3P28838 519 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 THBS4P35443 961 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 NPBWR1P48145 328 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 RAB1AP62820 205 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GRB2P62993 217 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 HGFACQ04756 655 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 ZP2Q05996 745 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 PLCXD2Q0VAA5 305 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 PDZK1IP1Q13113 114 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 C4orf48Q5BLP8 95 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 PLAC9Q5JTB6 97 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 DNLZQ5SXM8 178 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 HLA-DQA1Q5Y7H0 255 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 OR52W1Q6IF63 320 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 UNQ6126/PRO20091Q6UXV3 157 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 MARCH3Q86UD3 253 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 KMT5CQ86Y97 462 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 FAM71E2Q8N5Q1 922 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GVQW1Q8N7I0 195 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF321PQ8N8H1 164 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 OR10S1Q8NGN2 331 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 TMED6Q8WW62 240 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 DDIT4LQ96D03 193 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 MRGPRX4Q96LA9 322 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 C5orf34Q96MH7 638 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 TGM7Q96PF1 710 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LRRC61Q9BV99 259 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 PCED1AQ9H1Q7 454 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LMAN1LQ9HAT1 526 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 C1orf123Q9NWV4 160 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 COPS7AQ9UBW8 275 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 CACFD1Q9UGQ2 172 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 NPIPA1Q9UND3 350 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 MRPS28Q9Y2Q9 187 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 IGLV3-12A0A075B6K2 115 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 A0A0U1RQV5 110 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 PMS2P1A4D2B8 440 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LIPT2A6NK58 231 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 EEF1E1-BLOC1S5C9J1V9 151 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 P2RY10O00398 339 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 DEDDO75618 318 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 ONECUT2O95948 504 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 IGHV2-5P01817 119 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 SPTBP11277 2137 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 CTSEP14091 401 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 NME1P15531 152 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GNB3P16520 340 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 P2RY4P51582 365 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM50BP56557 158 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 SRSF5Q13243 272 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 HABP2Q14520 560 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 RHEBQ15382 184 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 ODF4Q2M2E3 257 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 LRRC37A5PQ49AS3 106 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 GPR157Q5UAW9 335 aa5.07□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF585AQ6P3V2 769 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms